Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0095 ATGGGTGCTCCCAAAGTTGCCAGATGTGGAAGAAGAAGGAGAACAATGGCTGGTAAAAGTTCAATTAATCAACCAGGAGCCGGCCATAGCTCACATAAACCAAGCAATTTTGATTTAGATGATCTAGAATGGACCAACAGGATTCCAGAGTGTCCAGAATACCACCCATCAGAGCATGAGTTTGAGCATCCTTTTGTTTATCTGCAGAAGATTGTTCATGAGGCTTCTAAATATGGTATATGCAAAATTATTGCTCCAATTGCTGCCTCCAATCCTGCTTCTTTTGTCTTAACGAAAGAGAGAATGGATTTCATGTTTGAAACAAACGTACAGCCTCTTCGACTTTCTAAATGGAATGAAAAGGATATAATGACCTTTTCTATGAGAGGCAGAAAATATACATATCATGAATTTGAGGCTGTAGCAAAGGAGGCCTTTTTCAGAAAATTTTGCGGTTCCAGAAGTCTTCCTTCTTCATATGTGGAAAAGGAGTTCTGGTGTGAGATGGCACGTGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATATTGAGGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAACTTCTCACGGCAGCTGCAGTCTCCATTGCGTTTAGTTGATGGAGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTTAGTATGTTTGCATGGCATGTGGAAGATCATTATTTGTGCAGCATAAATTATCATCACTCAGGTGCAAATAAAACTTGGTATGGTGTGCCAGGCTATGCAGCCTCTCAGTTTGAAAAGACTGTTTTACATCACGTGTATTGCAACAAGATCTTAACAAAACGTGGAGAAGATGGAGCCTTCCAATTTCTTGTACATAAAACAACCATGTTCCCTCCAAATGTCTTGTTACAACATGATGTGGCAGTATACAAGGCTGTGCAGAAGCCAGGAGAATTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCCACTGGTGATTGGTTTCCACTTGGGGCTGAAGCTAGTAGGCGTTACGCACAACTTAGAATGTTGCCTTTAATTCCATATGAGGAACTTCTATGTAAGGAAGCAATGTTGGTCTACAAGTTCTCAAAACCCAAAAGTTTCAAGAACAAACCTGAAGACATGAAATCTTATCAAGCTATTGTTCTTTCTTTCTTGCATCTTATGCAATTTTATAAGTCATCCCTTTTGCAACTGAACAGTGCAAAAAAGTTGTTGAGTTCTTCAAATAAATCAGGTTCACTGACATGCAGCCTCTGCCACAGGGATTGTTATGTAGCTTACTTGCAGTGCAAGTATTGCTATTCTCATCCAATTTGTCTTTTCCATGACATTGCAACACGGACTTGTTTATGCGGGAGAGACTATACTATTTTTACAATAAATGACATTTTCGCACTGGAAGATGCTGCCAAAAGTTTTCAACAAGAAAAAGAATACAATAATCGTTGGCATGAAAACAACAGTGTAAGGGGAACAGCAAATTCTCCAGTGGCAGCATCTAAACGAAAAACGAGAGTAGTGGACAGCATCAAGCACAGTGTTAAGAATGGGACAAAAATGAAGAATTGGAAAAGCAATGGCCCTCCATCTGCGAAGGGTACCACAAGACCAGGACTCATTTATAACTTGAGAAAAAGCAAATCAAAATTGATCGTATGA 1752 0.3978 MGAPKVARCGRRRRTMAGKSSINQPGAGHSSHKPSNFDLDDLEWTNRIPECPEYHPSEHEFEHPFVYLQKIVHEASKYGICKIIAPIAASNPASFVLTKERMDFMFETNVQPLRLSKWNEKDIMTFSMRGRKYTYHEFEAVAKEAFFRKFCGSRSLPSSYVEKEFWCEMARGEKGTVEYGVNIEGSAFSCDPDDRLGTSKWNLKNFSRQLQSPLRLVDGEIPGITDPMLYIGMLFSMFAWHVEDHYLCSINYHHSGANKTWYGVPGYAASQFEKTVLHHVYCNKILTKRGEDGAFQFLVHKTTMFPPNVLLQHDVAVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFATGDWFPLGAEASRRYAQLRMLPLIPYEELLCKEAMLVYKFSKPKSFKNKPEDMKSYQAIVLSFLHLMQFYKSSLLQLNSAKKLLSSSNKSGSLTCSLCHRDCYVAYLQCKYCYSHPICLFHDIATRTCLCGRDYTIFTINDIFALEDAAKSFQQEKEYNNRWHENNSVRGTANSPVAASKRKTRVVDSIKHSVKNGTKMKNWKSNGPPSAKGTTRPGLIYNLRKSKSKLIV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0095 583 Pfam jmjN domain 52 84 IPR003349 -
Apr7g0095 583 ProSiteProfiles JmjC domain profile. 195 368 IPR003347 -
Apr7g0095 583 ProSiteProfiles JmjN domain profile. 51 92 IPR003349 -
Apr7g0095 583 MobiDBLite consensus disorder prediction 17 31 - -
Apr7g0095 583 Pfam JmjC domain, hydroxylase 228 351 IPR003347 -
Apr7g0095 583 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 582 - -
Apr7g0095 583 SMART JmjN_1 50 91 IPR003349 -
Apr7g0095 583 MobiDBLite consensus disorder prediction 549 568 - -
Apr7g0095 583 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 17 582 - -
Apr7g0095 583 MobiDBLite consensus disorder prediction 1 36 - -
Apr7g0095 583 Gene3D Cupin 52 412 - -
Apr7g0095 583 SMART cupin_9 195 368 IPR003347 -
Apr7g0095 583 SUPERFAMILY Clavaminate synthase-like 201 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0095 Apr-Chr7 3823801 3827147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0095 48 514 JUMONJI Transcription Factor Family AT2G34880 30.074 2.11e-54 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr7g0095 JmjC 5.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0095 - - gmx:100809650 898.271