Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0048 ATGGAATTTGTGGGGAAAAGTGTTAAGAAAGAGGTGAAGGGGGTTGGGGTTATCTCTGGAACAGTGAAATCCTACGACCCTTCCTCTGGCTTCTTCGAGATCCTCTACCAAGACGGCGTTTCTGAGGAGTTGGAAGCCTCTGATGTTGCTTCCCTCATTCAATTTCAACCCCACCTTGCTAAGGCCAAGCCTCGGGTTGGTCGGAAGCCTAAGAAACGGCGCCGCTTGGAGCGGAAGCGCGAAATTGAAGCAGCTTCAGGTAATGTTAGTGAGAATTTGGTGGCTGAGGGTAGTGAATTTAGGGGGGTTTTGGATGCTAATGCTTCTGCTGCTGGTGGGAATTTGGAATTAGGTTGTGGGTTTGAGAGAGGTTTGGATGTGGGAATTGAGAATGGAGGGAATCTTAGAGGCATTGTTAATGGAACTGTTATTGAAAACGGGGGTGGAGAAACTCTGGGAAAGAAAATTGGGTTTGAAGAGAATTTGAAGAAGGGTGTATCTGCTAATGGGAATTGTGTTAAGGATGAGCTTGATTTGAATTCTAGGCTTAATCTGAACGAGGATTTCAATCTGAATGATGCTTGTGGTTCACCTTTGAACACGGAGGATAGTTTGAAAAGGAGAGATTGTATTGATTTGAATTTGGATGTGAGTAATGAGGATGATGTTAGCCTGAATGCTAGTTACTTGGGTTGTTCAGGAGGGGAAACGTTGCAGCGGGAATGTAAATTTGATTTGAATGTAGAGGTGTGTGAAGAAGTTAAGGAAGCTCAGGGTGATGCTGGTGCAAATGGTCATTATGAGGTAAATGCTTTGTTTAGTAAGACGGGCCAGCTCCCAGAGGAAGATGCAAATGTTAATCATAGACCAATAGAAGATGACAGTGTTCATTGTAGTTTGAATCATGTCTCTGATGCTATCAAAGTGGAGGTGATTCATATTTCTGCTGAGCATGCATCTAATGACACTTCGTTGTGTTTGATTGAGGGAAAGGAAGGGGAACATGTCAAAGAAGACGCACCAGCTATTGATTCTTTACAGGTTTCAAATGTGATTTCTGTTAGGGACTGTGATTCTGTGATGGTTCAGCGAATGGACTGTCATTCTGAAGGTGGTTTTGTCATAACTCATGAATGCCAAGATGATCCAGGGAGTCCATGCAAACAAGGAAATAGCCGAAGGAAGAGAAGAAAAGTATCAGATAACCTAAAATCCACACCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGGGCATCAGCTAGAAAACAGGATTCAAGCACTGTACCAGTGCAGGTCACTGATGATCCTTTGTTCTCCTTGGGAACCGTTACCTTAACTGAAGAAAATCCTCTAATCCCTGGTTCTGAGAAATATGAACATTGCAATGATCCTCTTCCAAAGCTGCAGTTACCCCCATCTTCTAAAAATTTGATTTTAGATGACGTTCCTGTTCTTGAACTTTTTTCTATTTATTCTTGTTTACGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTAGAGGATCTTGTAGCTGCACTGAAATCTGAAATCCCAACTATATTATTTGACAGCATTCATGACTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATACCTTTCCTCAGAGGGTTGCCAATCTGCATCTAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACCTGGCCTATTTTCATGGCTGAGTATCTTCTGATTCATGGTTCAGGATTTAACACTGGTTTTGACCTTAAACACCTAATGTTCAGAACTGATTACTACAAACAACCTGTAATTGTGAAGGTTGAGATTCTTCAGTACCTTTGTGATCATATGATTGAAGTGGAAGCCATAAGATCAGAGCTTAACAAAAGATCTTTGGTTACTGAGACTGATATGGGTTTTGATCAGAATATGTACTTTGACAATTGCAAGAAAAGAAAAGCTGTAATGGATGTTTCTGGTGGTTCTTGCTTGACTGAGGAGAATGTGGATGACACAACTGACTGGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGTAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGAATTGCTAGTGACAACCTGCCCGAAGGTGACTGGTATTGTCCAGAGTGTGCAATTGGCACACACAAGGCTTGGATGAATTCACGAAAGTCACTTCGAGGAGCAGACTTGGTAGGGATTGATCCTGATGGCCGTCTCTATTTTAACAGCTGTGGTTATCTATTAGTGTCAAACACATCTGAAGCAGGGTTGTTGTTCAATTACTACCACAGAAATGATCTACATGTAGTAGTGGAAGCTCTAAAATCTATGGATCCTTTATATGAAAGCATATTAATGGGTATCTATAAGCATTGGGATATCCCTGCTAATTTTAGTGTGGCTACTAGTGTCTTTAATCAAAGTTCTATTGAGAACATGCATATGAAGGGAGAATATTCTACTATGCATACATCTGTAGCACCTTTAACTTCTTCAGAAACATGTTTGGACAAGAATCAGGCTGATGATCAAAGAAAGTTGGATGAAAATTCAACTATTGACTGTTCTATGCATCTTGGCCAAGAGTTTCCAAAAGCTGGGAACCGCTTCGACTCAATGACAACCATAGAAAGTCCTTGTATTGCTTCAGAAGGATCAGCTGATACCACACAAATGAGATCAGGTGTTGAGAATGTTCAGGTATATGGACCTAAAAATTCCAATAGATCTGACGAATCCTTGAATCAATCAGGAGTTTCAGAAAAACAACATCTTGTTGGTGAATGTTTTTTGACATCTTCCAGCATAGATGTGAAACATAAAATAAACTTAAGATCAGTAGGTGCTAGTGCTGCCCCCTCCACAGACAATAAGGATACTTCAGAAGCACCTTGTGAAATTGACTACATAAACTATTACAGCTTTGCCCGAACTGCCTCCTTTGTTGCTCAAGTGTTTATGTGTAAGTCACCTGAAAAGATGAATAAGAATATTGCCTTGTCTGAAGAAGAAATAATTTCTGACCAATCAAAGGCCATTATGAAGAAATCTAGTAACTTCTATTGGCCAAGTATTCAGAACCTGAGTGCAGCTGCACAAAAGGAAAAATGTGGGTGGTGCTATTCTTGTAAAGTTGCAAATGAAGACAGGGATTGCTTGTTTAATTCTGTGGTGAAGCCTGTTTGGGAAGTGCCAAAAAGTACTTTAATTGGGCTTCAACCCAGGAAGATCCAGAATGGACACCTTAGAGAGATCATATGTCATATTTTCTCTCTTGAGGTTCGGTTACGTGGCCTTTTGTTGGGTCCTTGGTTGAATCTGCATCAAACTAATCTTTGGCAAAAGGATCTTTTGAAGACATCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTGCTAGAATCCAATCTGCGTCCTCTTGCACTTTCATCAGATTGGTTAAAGCATGTAGACTCTGTTGCTACTATGGGATCAGCTACTCATGTTGTGGTCAACTCACGCACATCTTCAAGGCATGGTATTGGAAGGAAAAGGGCTCGGTATTCAGATATTGAAACGAGTTCATCTTCAAATACTGCTAGTGGATTGGGGATGTACTGGTGGAGAGGTGGTAGGCTTTCTCGAAAATTGTTTAATTGGAAGGTTTTGCCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGGTGGTTGCACAAAGATACCAGGCATTTTATATCTTGAGAATTCAGATTTTGCAAGGAGAAGCAGATATGTTGCATGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCATGATATTGAGAACAACCATCCTCTATATGTGTTGGACAAAGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAAGCAATTGTACGCAGAAAGTGCACAGAAGGGCAATCTGTGAAATTCCTTCTCGATTTTGGTAAAAGAAGGGCTATTCCAGATATTGTTACTAAACATGGTTCTTTGTTGGAGCAATCCTCAAGTGAGAGGAAAAAATATTGGCTGGAGGAGTCTTATGTTCCATTGCATCTTCTAAAGAATTTTGAGGAAAAAAGAATTGTCCGCAGGTCCAATGATAAGAAACTCGGAAAAATTCTTGAGATTGGTAGAGTAAACAAGAAAGTTCCTCAACAAAGGGGATTTTTGTATTTGTTTTCCAGAATGGAAAGATCTGATTGTCATCAGTGTGAGCACTGCAACAAAGATGTTCCAGTGAGGGATGCTGTTAGCTGCCTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCTGGTGGCACAAGAAGTACAAAAAGTGCATATACGTGTCACAGATGTCAGGATGGCTTGCGTGCAAAGACTAATACTAACAAAAGGAAAGTTGAGTCAAAACTGCAGAATATTCAAGCAAAGAAACGTAAACATGTGTCTTCAGTTTGTAAATCAATGAACCTCACAGGCAATAAAAAGGCATTGAGTAAGCTACGGCAATTGAGATCTCGAAACAATAAGATCTCATCAAGCGTACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCCTTGTATATGCATAGTCAAATGAATGGAGGACATAAAAAAGGAATGCAAGGTAAAAAGAATGTAGGACGTAAAAAGGGAAAGCAAAATAAATCCAAGAAGGTGGCCTCTCAGAAGTCCAAGGAAACTACTGGCCAATATAAGAATTTGCCAGTAACTACTGCACATAAGAAAAGAACAAAACCCTGTAACAGTTACTGGCTTAATGGTCTTCAGTTGTCTAGAAAGCCAGATGATGATCGAGTAATGCTGTTTAAAGAGAAAAAACTTGTTTTCTCCTCCGAAGATTTGTCTGAGTCTCTTGATTATCCTAAATGCAGCCTTTGCTGTGGAAATGGGGGCACCTCAATGTATGTTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGGGATGCTTTTGGGCTCAATAGGGAGAATACCATACAACTTATTGGATTTAGATGCCATGTTTGTCGTGATAAGCCTGCTCCAGTCTGTCCCCATATGAAGATTAACACATTGTCTCACACTGAAGGTGATGCTGCAATTGAGTGTGGAGAGGAGTTAGCTAATCCTGTTTCTCCCCATCCTCTCAGTGAGGTTTGA 5208 0.4065 MEFVGKSVKKEVKGVGVISGTVKSYDPSSGFFEILYQDGVSEELEASDVASLIQFQPHLAKAKPRVGRKPKKRRRLERKREIEAASGNVSENLVAEGSEFRGVLDANASAAGGNLELGCGFERGLDVGIENGGNLRGIVNGTVIENGGGETLGKKIGFEENLKKGVSANGNCVKDELDLNSRLNLNEDFNLNDACGSPLNTEDSLKRRDCIDLNLDVSNEDDVSLNASYLGCSGGETLQRECKFDLNVEVCEEVKEAQGDAGANGHYEVNALFSKTGQLPEEDANVNHRPIEDDSVHCSLNHVSDAIKVEVIHISAEHASNDTSLCLIEGKEGEHVKEDAPAIDSLQVSNVISVRDCDSVMVQRMDCHSEGGFVITHECQDDPGSPCKQGNSRRKRRKVSDNLKSTPETVLRRSSRRASARKQDSSTVPVQVTDDPLFSLGTVTLTEENPLIPGSEKYEHCNDPLPKLQLPPSSKNLILDDVPVLELFSIYSCLRSFSTLLFLSPFELEDLVAALKSEIPTILFDSIHDSILQTLRKHLEYLSSEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFNTGFDLKHLMFRTDYYKQPVIVKVEILQYLCDHMIEVEAIRSELNKRSLVTETDMGFDQNMYFDNCKKRKAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECAIGTHKAWMNSRKSLRGADLVGIDPDGRLYFNSCGYLLVSNTSEAGLLFNYYHRNDLHVVVEALKSMDPLYESILMGIYKHWDIPANFSVATSVFNQSSIENMHMKGEYSTMHTSVAPLTSSETCLDKNQADDQRKLDENSTIDCSMHLGQEFPKAGNRFDSMTTIESPCIASEGSADTTQMRSGVENVQVYGPKNSNRSDESLNQSGVSEKQHLVGECFLTSSSIDVKHKINLRSVGASAAPSTDNKDTSEAPCEIDYINYYSFARTASFVAQVFMCKSPEKMNKNIALSEEEIISDQSKAIMKKSSNFYWPSIQNLSAAAQKEKCGWCYSCKVANEDRDCLFNSVVKPVWEVPKSTLIGLQPRKIQNGHLREIICHIFSLEVRLRGLLLGPWLNLHQTNLWQKDLLKTSDFLPVKRLLLLLESNLRPLALSSDWLKHVDSVATMGSATHVVVNSRTSSRHGIGRKRARYSDIETSSSSNTASGLGMYWWRGGRLSRKLFNWKVLPRSLVTKAARQGGCTKIPGILYLENSDFARRSRYVAWRAAVEMSTSVEQLALQVRELYSNIRWHDIENNHPLYVLDKESRKSVRLFKKAIVRRKCTEGQSVKFLLDFGKRRAIPDIVTKHGSLLEQSSSERKKYWLEESYVPLHLLKNFEEKRIVRRSNDKKLGKILEIGRVNKKVPQQRGFLYLFSRMERSDCHQCEHCNKDVPVRDAVSCLHCKGYFHKRHVRKSGGTRSTKSAYTCHRCQDGLRAKTNTNKRKVESKLQNIQAKKRKHVSSVCKSMNLTGNKKALSKLRQLRSRNNKISSSVPLRRSTRKAKSLYMHSQMNGGHKKGMQGKKNVGRKKGKQNKSKKVASQKSKETTGQYKNLPVTTAHKKRTKPCNSYWLNGLQLSRKPDDDRVMLFKEKKLVFSSEDLSESLDYPKCSLCCGNGGTSMYVACEICGDWFHGDAFGLNRENTIQLIGFRCHVCRDKPAPVCPHMKINTLSHTEGDAAIECGEELANPVSPHPLSEV* 1736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0048 1735 MobiDBLite consensus disorder prediction 1558 1575 - -
Apr7g0048 1735 SMART testlast3 481 541 IPR018501 -
Apr7g0048 1735 PANTHER PHD FINGER FAMILY PROTEIN 1 1709 - -
Apr7g0048 1735 Coils Coil 1473 1493 - -
Apr7g0048 1735 CDD PHD1_AIRE 678 720 - -
Apr7g0048 1735 ProSiteProfiles Zinc finger PHD-type profile. 676 723 IPR019787 -
Apr7g0048 1735 SMART PHD_3 1646 1693 IPR001965 -
Apr7g0048 1735 SMART PHD_3 1422 1469 IPR001965 -
Apr7g0048 1735 SMART PHD_3 678 721 IPR001965 -
Apr7g0048 1735 MobiDBLite consensus disorder prediction 1525 1589 - -
Apr7g0048 1735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 738 IPR013083 -
Apr7g0048 1735 CDD PHD_SF 1647 1692 - -
Apr7g0048 1735 Pfam DDT domain 485 537 IPR018501 -
Apr7g0048 1735 SUPERFAMILY FYVE/PHD zinc finger 664 727 IPR011011 -
Apr7g0048 1735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1640 1699 IPR013083 -
Apr7g0048 1735 MobiDBLite consensus disorder prediction 380 428 - -
Apr7g0048 1735 ProSitePatterns Zinc finger PHD-type signature. 679 720 IPR019786 -
Apr7g0048 1735 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1709 - -
Apr7g0048 1735 Pfam PHD-finger 679 721 IPR019787 -
Apr7g0048 1735 ProSiteProfiles DDT domain profile. 481 541 IPR018501 -
Apr7g0048 1735 SUPERFAMILY FYVE/PHD zinc finger 1634 1696 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0048 Apr-Chr7 1942052 1956435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0048 1 1707 PHD Transcription Factor Family AT5G12400 40.891 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Apr7g0048 DDT 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0048 - - gmx:100800973 2696.38