Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0042 ATGGAACGGTCGAATGCAAATGACGATAGGTTTTCGAATCCAAACACGAACGCTACAACCACCTCAAGCTTCACCTTCAGTACCCCTTCCGTTTCGGGCCTGTCCAGGCCCAGATTCGTGAAGGTTCGCAAGCACAACAACGCACCCGCTTTCAATCCCTTTCGCAACGGTGTTGCCAATGCCCCATTCAACAACAACAATGATTCTGCTTCTTCGTATTTCGATAAGGGAATCGGCGATCGATTCAGGAATCTCCAAATTGGGAATGCAAATGAGGGTTTCGACGAACACCTCGGTGAGTTTGCATTTTCATCTGCTTCTTCTCGTGTTAACGAAAGAGGTTTTGATGTCTCTGTTGAATCGGAACTCCAGAATGAGTTGAAGAACAAATTGAATATTAAAGAAAGAGGAGACGGCAATGCAGTTGCTGAGAACTCAGCGAATGAAGTTATATACCAAATGAAGAACCTCAACGTGAATGACTCTATTGGTGGTAATGTTCCAATGAGCCAAGTTGATCATCGTGAAAAGGAAACAGAAGGAATTTTGTTAAGGAAATTGGATGAGTTAAACCTAGATAATGAGAAGAAGCAGGACTCTGTTGAACCAAATTTGTGCAATCCTTTTGTGGAGTGTATCCAAAGATATTCAAGTGGTGGTGCTCATGTTGATTCGGAGAAACGTGACAAAGACGGTGGAATGTCACGAACTGCTGCATCAGCATCATCCTCTATGTTGTTTTCTGGTGATTGTGTGAGTTTTCAACCTGTTGGTGTTACCAAGAGGGATGAATTTGTGTTTACTGGTAAACAAGATACTTCAGGATCATCTTTTGTTGAGTTTAAAACGCCTGCACCAAAAGTTGGCAAAGAAGGAAAACTGAAGGAAAAAAATAGCAAACTGAGAATGAGTAAAAGTAGAGAAAAACTGAAGCATTATACCTCGGCCCAGCCATGGCCTGGACAAGGTTTTGTTCATAAGGGAAGTGTTTCCCAAGAAGAATTGCAGGGTTCTTCAGAGACTTGTTCGCCAATGGATGTGTCTCCATACCAAGAAAAACTGGCTCAAAATGAAATCTCTAGGGAAAATTCTTTGACATCCAATGAGTCATTTAGTGTTGATAACAACTCTGTTGCTAATGATTCAATACCAACCACTTCTATTGATCCCATTGATGAAGATCTAATTGTGGCCACTCAGAGCTTGACTATAAATGGGGTAGATGTTGTGTGTGGAGAAACAAAGGAGGAAAGTTCAGAGTATTGTAAACATGAAAATAGTGGTGTTGAAGACCCAAAGGATGATTCAATTTCTGGGGTTGAAACTGAAAGCTTTAAGTCTGCCAATGATGAAGTGGACATAACTAGTGATGTGGCTTATATATTGGCAGAAACTGAAGCCCGTGATAGTGATAGAACTTTACATCTTGGTAGTTCTTTGAGTGCAAAAAATGTAAGTGGGTCTGCCTTCACATTTGCTGCTGCGTCTTCGGCTGAAGCTCAATCATCCAGCCCAAAACGTCATCACAAAAAGAAAAACTGGGTAAATGTTGGTCATGATTCTTACTACACACCAAACATAAAGGTTCCATATTCATCGTCATCTGTGGCATTTTCTCCATTTTCTGGAACTTCATCTCTTTTCATATCTGGACAAAGCCTAAAAGCCAAGGTATCTTCTCCTCAACCCAAAACAAGGGATTCCAATGTGAAGGAAGAGCAGGGGATAAAGGGGTCTTCTGCTTCTATTTCTGCTGCAATAATTGCTGCTCAGGAAGACTGTGAAAAGTGGAGGCTCCGAGGAAACCAAGCCTATAAAAATGGGGATTTGTCTATGGCTGAGAGTTGTTACAAACAAGGACTTGATTGTGTGTCTAAAGAAGAAGCATCTCGGAGCTGTCTCAGGGCTTTGCTGCTATGTTATAGCAACCTTGCCGCTACACACATGTCTCTTGGTAGGATGAGAGATGCACTAGAAGATTGTATGAAGGCTGCTGAAATAGATCAAAATTTCCTCAAGGTGCAACTGAGAGCTGCAAATTGTTACCTTGCTCTGGGGGAAGTTGAAGGTGCATCACAATATTTTAAAAGGTGCTTGCAATCAGGAACTGATGTTTGTGTGGATCGAAAAATTGCTGTGGAAGCCTCTGATGGCTTACAAAAGGCACAGAAAGTATCAGATTTCATCAATCATGCTGCTCAGCTTTTGCAAAGAAGAACATCCTCTGATGCAGAGCGAGCATTAGAACATATTAATGAGGCATTGATAATAAGTTCATACTCTGAAAAATTGCTTGAAATGAAGGCAGAGGCTTTTCTAATGCTTTGTAGATATGAGGAGGTGATTCAGCTGTGTGACAAGACCCTTGGTTCTGCTGAGAAGAATGCTTGTCTTTTGGATACTGGTTGCCAAGTCACAGATCTGGATAATTCACAACTCTCAAAAGGGTTCTACTTCAGAATATGGCGATGCTCAATGATGCTTAAAGCTTACTTTCACCTAGGAAAGCTTGAAGAAGGTCTTTCTTTGCTGGAGCAACAAGAGGAGAAGATGTCTGACATAAACAAGAGTGCAAGCAAGGTTTTGGATTCACTCATACCACTAGCTTCCACTGTACGCGAGCTCTTGCGTCACAAGACTGCAGGGAATGCAGCATTTCAGGCTGGAAGGCACACGGAAGCTGTCGAACACTATACATCTGCTTTATCATGCAATGTGGAGTCTCGTCCATTTGCAGCTGTCTGTTATTGTAATCGTGCCACTGCATATAAAGCTTTAGGTCAAATAACAGATGCTATTGCAGACTGCAGTCTGGCTATAGCTCTTGATGGAAATTATTTGAAGGCACTTTCTAGACGTGCAACTCTGTATGAGATGATCAGAGATTATGCCCAAGCAGCCACTGATCTTAGGAGACTTGTCTCTCTTCTCAGTAAGCGGGTGGAGGACAATGCCAATCAGCTTGGAATATCTGAGAGAGCAATTAATTATACTAATGATTTGAAACAAAATCATGTTTGGCTTTCTGAAATAGAGGAGGAAGCCAGAAAGGAGATCCCTCTTGATGTGTACCTCATTTTGGGAGTTGAACCATCTGTTTCAACATCTGAAATCAAGAAGGCCTATCGGAGAGCTGCACTTAGACACCATCCAGACAAGGTTGCCCAGTCTTTGACTAGAAGTGACAATGGAGATGATCAGATATGGAAGGTTATTGCTGAAGAACTACACAGAGATGCTGACAAGCTTTTCAAAATAATTTTAGAGGCATATGCTGTGCTCTCAGACCCTGCCAAGCGTGCACGTTATGATGCAGAAGAAGAAATGAGGAATTCCCAAAAGAGACGCCATGGACCTATAGCTAGAAATAATGCGGATAGCCAGTATCCATTTGAACAAAGCAACAGGAGACAGTGGAGAGAGGTTCGGAGAACATATGGTCATCCATCTTCTCGAGGTTCTGAACCAGGTCGATCAAGTTGGAAATAA 3489 0.4202 MERSNANDDRFSNPNTNATTTSSFTFSTPSVSGLSRPRFVKVRKHNNAPAFNPFRNGVANAPFNNNNDSASSYFDKGIGDRFRNLQIGNANEGFDEHLGEFAFSSASSRVNERGFDVSVESELQNELKNKLNIKERGDGNAVAENSANEVIYQMKNLNVNDSIGGNVPMSQVDHREKETEGILLRKLDELNLDNEKKQDSVEPNLCNPFVECIQRYSSGGAHVDSEKRDKDGGMSRTAASASSSMLFSGDCVSFQPVGVTKRDEFVFTGKQDTSGSSFVEFKTPAPKVGKEGKLKEKNSKLRMSKSREKLKHYTSAQPWPGQGFVHKGSVSQEELQGSSETCSPMDVSPYQEKLAQNEISRENSLTSNESFSVDNNSVANDSIPTTSIDPIDEDLIVATQSLTINGVDVVCGETKEESSEYCKHENSGVEDPKDDSISGVETESFKSANDEVDITSDVAYILAETEARDSDRTLHLGSSLSAKNVSGSAFTFAAASSAEAQSSSPKRHHKKKNWVNVGHDSYYTPNIKVPYSSSSVAFSPFSGTSSLFISGQSLKAKVSSPQPKTRDSNVKEEQGIKGSSASISAAIIAAQEDCEKWRLRGNQAYKNGDLSMAESCYKQGLDCVSKEEASRSCLRALLLCYSNLAATHMSLGRMRDALEDCMKAAEIDQNFLKVQLRAANCYLALGEVEGASQYFKRCLQSGTDVCVDRKIAVEASDGLQKAQKVSDFINHAAQLLQRRTSSDAERALEHINEALIISSYSEKLLEMKAEAFLMLCRYEEVIQLCDKTLGSAEKNACLLDTGCQVTDLDNSQLSKGFYFRIWRCSMMLKAYFHLGKLEEGLSLLEQQEEKMSDINKSASKVLDSLIPLASTVRELLRHKTAGNAAFQAGRHTEAVEHYTSALSCNVESRPFAAVCYCNRATAYKALGQITDAIADCSLAIALDGNYLKALSRRATLYEMIRDYAQAATDLRRLVSLLSKRVEDNANQLGISERAINYTNDLKQNHVWLSEIEEEARKEIPLDVYLILGVEPSVSTSEIKKAYRRAALRHHPDKVAQSLTRSDNGDDQIWKVIAEELHRDADKLFKIILEAYAVLSDPAKRARYDAEEEMRNSQKRRHGPIARNNADSQYPFEQSNRRQWREVRRTYGHPSSRGSEPGRSSWK* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0042 1162 Pfam Tetratricopeptide repeat 641 670 IPR019734 GO:0005515
Apr7g0042 1162 Pfam Tetratricopeptide repeat 915 945 IPR019734 GO:0005515
Apr7g0042 1162 SUPERFAMILY TPR-like 592 700 IPR011990 GO:0005515
Apr7g0042 1162 ProSiteProfiles dnaJ domain profile. 1022 1107 IPR001623 -
Apr7g0042 1162 Gene3D Tetratricopeptide repeat domain 874 996 IPR011990 GO:0005515
Apr7g0042 1162 MobiDBLite consensus disorder prediction 289 324 - -
Apr7g0042 1162 MobiDBLite consensus disorder prediction 8 32 - -
Apr7g0042 1162 MobiDBLite consensus disorder prediction 1102 1121 - -
Apr7g0042 1162 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 1161 - -
Apr7g0042 1162 Gene3D Tetratricopeptide repeat domain 593 871 IPR011990 GO:0005515
Apr7g0042 1162 CDD DnaJ 1022 1096 IPR001623 -
Apr7g0042 1162 MobiDBLite consensus disorder prediction 558 577 - -
Apr7g0042 1162 PRINTS DnaJ domain signature 1024 1042 IPR001623 -
Apr7g0042 1162 PRINTS DnaJ domain signature 1042 1057 IPR001623 -
Apr7g0042 1162 PRINTS DnaJ domain signature 1079 1099 IPR001623 -
Apr7g0042 1162 MobiDBLite consensus disorder prediction 1 32 - -
Apr7g0042 1162 SUPERFAMILY Chaperone J-domain 977 1103 IPR036869 -
Apr7g0042 1162 SMART tpr_5 638 671 IPR019734 GO:0005515
Apr7g0042 1162 SMART tpr_5 875 908 IPR019734 GO:0005515
Apr7g0042 1162 SMART tpr_5 594 627 IPR019734 GO:0005515
Apr7g0042 1162 SMART tpr_5 762 795 IPR019734 GO:0005515
Apr7g0042 1162 SMART tpr_5 672 705 IPR019734 GO:0005515
Apr7g0042 1162 SMART tpr_5 913 946 IPR019734 GO:0005515
Apr7g0042 1162 SMART tpr_5 947 980 IPR019734 GO:0005515
Apr7g0042 1162 MobiDBLite consensus disorder prediction 1102 1162 - -
Apr7g0042 1162 Pfam DnaJ domain 1022 1104 IPR001623 -
Apr7g0042 1162 Gene3D DnaJ domain 1009 1126 IPR036869 -
Apr7g0042 1162 MobiDBLite consensus disorder prediction 289 312 - -
Apr7g0042 1162 SMART dnaj_3 1021 1099 IPR001623 -
Apr7g0042 1162 MobiDBLite consensus disorder prediction 419 439 - -
Apr7g0042 1162 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 1161 - -
Apr7g0042 1162 ProSitePatterns Nt-dnaJ domain signature. 1084 1103 IPR018253 -
Apr7g0042 1162 SUPERFAMILY TPR-like 878 978 IPR011990 GO:0005515
Apr7g0042 1162 SUPERFAMILY TPR-like 742 846 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0042 Apr-Chr7 1860470 1869930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0042 1024 1105 C2H2 Transcription Factor Family AT1G74250 35.366 2.66e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0042 K09527 - gmx:100790770 1578.92