Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0018 ATGGGTTCAGCGCTGGCTCGTGGAAGGCACACGCTTGATGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGGATGCGATTCAGATTGGGTCCTTTCCTTGACAACAGCAATCAGCACATCCCTCACTCGAATGCGAAAATGGATCAGTGGAAGCCGCAAGACTCTGCTTCAGACTCAGCATCTCAACACGTCACTGTCAACCCTAACCGCTTCCGCAACTCACAGCTCTCGAGAGAGAGGGAGAGGGGTGAAGGAGGAGAAGGTGAGGATCCCAGCGCTGCACGAAAGGTTCAGAAGGCAGACCGCGAGAAACTCAGAAGGGATCGACTCAATGAACACTTTCAAGAGTTAGGAAACACGTTAGATCCTGATAGACCAAAGAATGACAAGGCAACCATCCTTACTGAGACCGTCCAAATGCTAAAGGACTTAACCGCAGAGGTGAATAGGCTGAAAAAGGAGCATAAAGCACTTTCGGAAGAGTCACGCGAATATGAGCAGAGAGTGAGAATCATGTTTCCATGGACTGCAATTGACCACTCTGTTGTCATGAGTTCACCTTACTCATATCCAGTTCCCATACCAATCTCTCCTGGTCCAATATCCATTCACCCAGCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAATCCTGGTCACGTACCTAACCCTTGTTCAATGTATGTCCCATATCCTACTCCAACTAACCCACTGGGAGAGATTCCACCAGCTCAGTATGCTTCCACATCCGTCTCTAACCAAAAAGAATCACCAAGCAAGTCACCAATTTATAGAAGGCCCATTGATGCCGAAAGATGTAGCACGTCTCACGATGTGGCCACAGAGCTTGAACTTAAGATGCCGGGCTCATCGTCAACACAACAGGATTGCAGTTCTGGAGAAAGAAAAGGCAAGCATTCAGTGATGAAGGATAAAATCATCACAGATGGGAGTGCTTCAAGCCAGTATTCTTCATCTCAAGGACTTCAAGATAGCTCCAACAGCGTGGGAGACAACCCAAAGACTGATAATTGA 1041 0.4755 MGSALARGRHTLDASLSLSLSLSLSGMRFRLGPFLDNSNQHIPHSNAKMDQWKPQDSASDSASQHVTVNPNRFRNSQLSRERERGEGGEGEDPSAARKVQKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLTAEVNRLKKEHKALSEESREYEQRVRIMFPWTAIDHSVVMSSPYSYPVPIPISPGPISIHPALQPFPFFGNQNPGHVPNPCSMYVPYPTPTNPLGEIPPAQYASTSVSNQKESPSKSPIYRRPIDAERCSTSHDVATELELKMPGSSSTQQDCSSGERKGKHSVMKDKIITDGSASSQYSSSQGLQDSSNSVGDNPKTDN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0018 346 MobiDBLite consensus disorder prediction 316 346 - -
Apr7g0018 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 146 IPR011598 GO:0046983
Apr7g0018 346 Coils Coil 136 170 - -
Apr7g0018 346 MobiDBLite consensus disorder prediction 244 262 - -
Apr7g0018 346 Pfam Helix-loop-helix DNA-binding domain 97 146 IPR011598 GO:0046983
Apr7g0018 346 PANTHER TRANSCRIPTION FACTOR BHLH11 69 169 - -
Apr7g0018 346 PANTHER TRANSCRIPTION FACTOR BHLH11 167 345 - -
Apr7g0018 346 MobiDBLite consensus disorder prediction 40 111 - -
Apr7g0018 346 Gene3D - 95 174 IPR036638 GO:0046983
Apr7g0018 346 MobiDBLite consensus disorder prediction 267 281 - -
Apr7g0018 346 CDD bHLH_AtILR3_like 101 169 - -
Apr7g0018 346 PANTHER TRANSCRIPTION FACTOR BHLH121 167 345 IPR044579 GO:0003700|GO:0055072
Apr7g0018 346 PANTHER TRANSCRIPTION FACTOR BHLH121 69 169 IPR044579 GO:0003700|GO:0055072
Apr7g0018 346 SMART finulus 102 152 IPR011598 GO:0046983
Apr7g0018 346 MobiDBLite consensus disorder prediction 241 346 - -
Apr7g0018 346 MobiDBLite consensus disorder prediction 40 75 - -
Apr7g0018 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 163 IPR036638 GO:0046983
Apr7g0018 346 MobiDBLite consensus disorder prediction 76 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0018 Apr-Chr7 969854 974080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0018 95 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 46.491 1.71e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr7g0018 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0018 - - gmx:100818281 376.711