Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1422 ATGGAGACAAAGTTTTGGGGTTCAGTTTTCATCTGGTGGGTCTTCTCAGCTCACCCATGGTTGTTGATTTCTGCTAACATGGAAGGTGATGCATTACATAGCCTGAGGACAAATTTAGAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCGACACTTGTCAATCCATGCACGTGGTTTCATGTAACATGTAACAATGACAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGGCAACTTGTTCCACAGCTTGGCCAGCTCAAAAACTTACAGTATTTGGAACTTTACAGCAATAATATTAGCGGTCCAATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTTAACTGTTTCACTGGAACTATCCCGAATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCCTGACTGGGCCTATCCCTATGTCACTGACTAATATTTCAGCTCTCCAAGTGCTGGATTTATCTAATAACCATCTCTCAGGCGTGGTCCCTGATAATGGATCCTTCTCATTATTCACACCTATCAGTTTTAACAACAACTTGGATCTATGTGGTCCAGTCACGGGGCACCCTTGCCCTGGGTCCCCTCCATTTTCTCCTCCTCCTCCTTTCGTCCCACCACCCCTAATCTCAGCTCCAGGTAATAGTGCCACTGGTGCAATAGCCGGAGGAGTAGCTGCAGGAGCAGCTGTATTATTTGCTGCTCCTGCAATTTTGTTTGCATGGTGGCGTCGAAGGAAACAAATAGAAATTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTACATCTTGGGCAGCTTAAGAGGTTCTCATTGCGAGAACTGCAAGTTGCAACTGATACTTTCAGCAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCATTGGTTGCTGTGAAAAGATTGAAAGAAGAGCGTACACCTGGTGGAGAGCTTCAGTTTCAGACTGAAATAGAGATGATCAGCATGGCGGTGCATCGGAATCTCCTCCGTTTACGTGGGTTCTGTATGACGCCAACTGAAAGGCTACTTGTTTATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCAGCACATCAGCAACCCCTCAATTGGCCAACAAGGAAACAAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATCATTCATCGTGATGTAAAAGCTGCAAACATACTGTTGGATGAGGTGTTTGAGGCTGTTGTTGGGGACTTTGGGTTGGCTAAACTAATTGACTACAAGGACACCCATGTTACAACTGCTGTACGGGGCACAATTGGGCACATAGCACCAGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACTGATGTCTTTGGGTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTTGACTTGGCTCGGCTTGCGAATGATGATGATGTTATGTTGCTTGATTGGGTTAAAGGACTTCTGAAAGAAAAGAAGCTAGAAATGCTGGTTGATCCTGATCTCCATAACAATTACATAGAAGCCGAGGTAGAACAGTTAATACAGGTTGCATTGCTTTGCACACAAGGTTCCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCAAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTCCGCCAGGAAGTGGAGCTGCTCCCTCATCCCCATTCTGATTGGATTGTTGACTCAACTGAAAATATACATGCAGTTGAGTTATCTGGTCCGAGGTAA 1872 0.4498 METKFWGSVFIWWVFSAHPWLLISANMEGDALHSLRTNLEDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNCFTGTIPNSLGKLSKLRFLRLNNNSLTGPIPMSLTNISALQVLDLSNNHLSGVVPDNGSFSLFTPISFNNNLDLCGPVTGHPCPGSPPFSPPPPFVPPPLISAPGNSATGAIAGGVAAGAAVLFAAPAILFAWWRRRKQIEIFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEIEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLNWPTRKQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEVFEAVVGDFGLAKLIDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVQMLEGDGLAERWDEWQKVEVLRQEVELLPHPHSDWIVDSTENIHAVELSGPR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1422 623 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Apr6g1422 623 ProSiteProfiles Protein kinase domain profile. 300 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1422 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 623 - -
Apr6g1422 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Apr6g1422 623 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Apr6g1422 623 Pfam Protein kinase domain 301 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1422 623 SUPERFAMILY Protein kinase-like (PK-like) 279 575 IPR011009 -
Apr6g1422 623 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Apr6g1422 623 Gene3D Transferase(Phosphotransferase) domain 1 377 594 - -
Apr6g1422 623 SMART serkin_6 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1422 623 SUPERFAMILY L domain-like 29 192 - -
Apr6g1422 623 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 14 623 IPR031048 GO:0004675|GO:0005102|GO:0006468
Apr6g1422 623 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1422 Apr-Chr6 22605093 22612411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1422 18 623 Receptor kinase-like Gene Family AT1G71830 88.303 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Apr6g1422 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1422 K13418 - gmx:100789884 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1422 6 22605093 22612411 Apr6g1422 6 22605093 22612411 ECH
Apr6g1422 6 22605093 22612411 Apr8g2053 8 31168413 31175316 PCT