Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1403 ATGGCTGATTCTGATACCAATTACAATGAACCATCAAATATTTCATCTCTCGCTACCAATGCTAATACACTTAATGACCCAGGAAATGATGTGAAGTTGAGTTCTAGGGCCCAAAGAGAGGCTCTGCCAGGTGAGCCTAAGTGCATTATCTGTGGCCGCTATGGTGAGTATATATGTGATGAAACTGATGATGACGTTTGCAGTTTGGAATGCAAACAAGCACTACTTTGTAGAGTTGCCAAATCCTTGGCTCCTGCTGGAGGTCTTCCACTGCCTAAAAAGATTCCTGGAGCTGATGAGTGCCTTTATGTTAGAGATACTGATTACGAATCAGGAACTCCGTCTGTGGCTAGTGATGAGGCTGAATTGCTTAGAAAGAAGCTTGACATTCATGTGAAGGGTGATGTTGTAGCGCCAGTGTTGTCATTCGCATCCTGTAAACTTCCTGACAAGCTCCTCCACAATATAGAAGCTGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGATGAGAAAAAACATGCTTGTTTTGGCTGATACAGGATCTGGGAAGTCTGCTTCATTTCTTATTCCGATAATTTCTCGTTGTGTGAGTTATCGTCGGCAGTTTGTTTCAGATAAGAAGCCTTTAGCTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGATCATGCTAAATTGCTTGGAAAGGGGTTGCCTTTTAAAACTGCACTTGTGGTTGGTGGCGAGGCCATGGCTGGACAACTCTACCGCATTCAACAAGGTGTGGAATTGATCGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTAATGAAGCATGAGATTGACTTAGATGATGTGATGGCTTTCGTTGTGGATGAGGTTGACTGCATGCTGCAAAGGGGTTTTAGAGATCAGGTCTTCCAGATATATAGGGCTCTTTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATATAGAGAAGATGGTTTACTCTCTGGCAAAAGGTACAGTGGTTATATCTGTTGGAGAGCCTAATAGACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGAAAAAGAAACAGAAACTATTTGACATTTTGGTGAGTAAGAAACATTTTAAGCCACCTGCTGTTATATATGTGGGCTCCAGACTTGGGGCAGATCTCCTGGCAAATGCAATTACAGTTTCCACAGGAATTAAAGCTGGTTCAATTCATGGGGAGAAATCTATGAAGGAAAGGAGAGATATAATGCAGTCCTTTTTGGTGGGTGAGGTTCCAGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGTGTTGATCTATTGGGTGTAAGACAGGTAATTGTATTTGACATTCCAAATTCCATTAAGGAGTATGTACATCAGATTGGAAGGGCGTCTAGAATGGGTGAGGAAGGTCAAGCCATAGTATTTGTGAATGAGGAGAATAAGAATGTTTTTGCAGAGTTAGTTGATGTTCTAAAATCTGCTGGAGCAGCTGTACCTCGGGAGCTTGTCAATTCACAATACACCACAGGATTTTTCTCTGGTGGCAAGGGTTCAAGGAAGAGAAAGCATGCATGGTGA 1623 0.4295 MADSDTNYNEPSNISSLATNANTLNDPGNDVKLSSRAQREALPGEPKCIICGRYGEYICDETDDDVCSLECKQALLCRVAKSLAPAGGLPLPKKIPGADECLYVRDTDYESGTPSVASDEAELLRKKLDIHVKGDVVAPVLSFASCKLPDKLLHNIEAAGYDMPTPVQMQAIPAALMRKNMLVLADTGSGKSASFLIPIISRCVSYRRQFVSDKKPLAMVLTPTRELCIQVEDHAKLLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLMKHEIDLDDVMAFVVDEVDCMLQRGFRDQVFQIYRALSQPQVLMYSATMSNDIEKMVYSLAKGTVVISVGEPNRPNKAVKQLAIWVESKKKKQKLFDILVSKKHFKPPAVIYVGSRLGADLLANAITVSTGIKAGSIHGEKSMKERRDIMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDIPNSIKEYVHQIGRASRMGEEGQAIVFVNEENKNVFAELVDVLKSAGAAVPRELVNSQYTTGFFSGGKGSRKRKHAW* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1403 540 CDD SF2_C_DEAD 359 491 - -
Apr6g1403 540 Gene3D - 28 84 - -
Apr6g1403 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 496 IPR027417 -
Apr6g1403 540 SMART helicmild6 400 482 IPR001650 -
Apr6g1403 540 Pfam DEAD/DEAH box helicase 165 335 IPR011545 GO:0003676|GO:0005524
Apr6g1403 540 MobiDBLite consensus disorder prediction 1 37 - -
Apr6g1403 540 Pfam Helicase conserved C-terminal domain 372 482 IPR001650 -
Apr6g1403 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Apr6g1403 540 SMART ultradead3 160 362 IPR014001 -
Apr6g1403 540 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 29 524 - -
Apr6g1403 540 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 29 524 - -
Apr6g1403 540 Gene3D - 110 349 IPR027417 -
Apr6g1403 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 521 IPR001650 -
Apr6g1403 540 Gene3D - 350 523 IPR027417 -
Apr6g1403 540 Pfam HIT zinc finger 46 72 IPR007529 -
Apr6g1403 540 MobiDBLite consensus disorder prediction 1 32 - -
Apr6g1403 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 347 IPR014001 -
Apr6g1403 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1403 Apr-Chr6 21584538 21587064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1403 135 502 Eukaryotic Initiation Factors Gene Family AT3G19760 28.418 8.18e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1403 K19466 - gmx:100781473 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1403 6 21584538 21587064 Apr6g1403 6 21584538 21587064 ECH