Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1392 ATGAATACCATCACGTCATCCCCATCGTCCTCCAAGTCCAAAAAGAAGCAAACGACAACACCACAAGAGCAGCAACAACACGAAACGGCATGGGGTGGGAGGTACCTCGGAGTAAGGAGAAGGCCGTGGGGAAGATATGCTGCGGAAATTCGTGACCCTTCCACCAAGGAGAGGCATTGGTTGGGTACCTTCGACACCGCCGAAGAGGCCGCCCTGGCATACGACAGGGCTGCCCGCTCCATGCGCGGGTCGCGTGCCCGAACCAACTTTGTCTACCCGGATACCCCGCCGGGTTCCTCCGTCACCTCCATACTCTCTCCAGATGAACAAACTCAAACCCAAATCCACCATGCTCAAGAATTCTCCTCTCTGTTCGACCAAAATCCATTTACCCAACAACCCGACCCGAATCCGCAATTCTCCTTGGGCGGGTACCCGGTGATGACTAATACAACTACCTTTTCTACTACAGATAGCTACAGTTTTGGTTACACTGAGCAAAGTGAAGGAGGAACCAATGTGGAGGGTTCACATTTTAAACTGTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATTACAAGCTCTATGGGCTATGACATGGGTCATGGGTTTTACGGAGACAGCACCGGGTATTCGGATCCATGTTCCAATCTGAGTGAAAATGGGTCGGGTTACCCGTATTTGGGGTTTGAGTCCGGTGATTATGTGCATAGTCCACTTTTTAGTGCAATGCCAGCAGTGTCAGATAATGTGGCAACGGGTCATGATGGTTTTGACTTGGGAAGCACTTCTTATTTCTTCTGA 816 0.5074 MNTITSSPSSSKSKKKQTTTPQEQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTSILSPDEQTQTQIHHAQEFSSLFDQNPFTQQPDPNPQFSLGGYPVMTNTTTFSTTDSYSFGYTEQSEGGTNVEGSHFKLFDDGETQLPPLPPDITSSMGYDMGHGFYGDSTGYSDPCSNLSENGSGYPYLGFESGDYVHSPLFSAMPAVSDNVATGHDGFDLGSTSYFF* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1392 271 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Apr6g1392 271 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Apr6g1392 271 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Apr6g1392 271 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 5 271 - -
Apr6g1392 271 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 271 - -
Apr6g1392 271 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Apr6g1392 271 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Apr6g1392 271 MobiDBLite consensus disorder prediction 1 34 - -
Apr6g1392 271 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Apr6g1392 271 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Apr6g1392 271 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Apr6g1392 271 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1392 Apr-Chr6 21209090 21209905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1392 1 262 AP2-EREBP Transcription Factor Family AT5G13910 44.776 2.38e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr6g1392 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1392 K09286 - gmx:100809600 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1392 6 21209090 21209905 Apr6g1392 6 21209090 21209905 ECH
Apr4g1520 4 16223030 16223800 Apr6g1392 6 21209090 21209905 PCT