Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1391 ATGGCTCAGATTGCTAATCTTATTCTCAATTTTTTGGTTCTTCAGAACGATATTGATTTGCTGAATCCCCCAGCGGAGTTGGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTTCAGTCCCCAAATTCCTTCTTCATGGATGTTAAGTGCCAGGGCTGTTTCAATATAACCACTGTGTTTAGCCACTCTCAGACAGTTGTGGTATGCGGTAATTGCCAGACTGTGTTGTGCCAACCGACTGGTGGACGGGCAAGGTTAACTGAAGGATGCTCGTTTAGGAAGAAGGGAGACTGA 294 0.4558 MAQIANLILNFLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1391 97 Gene3D - 16 96 IPR023407 -
Apr6g1391 97 PANTHER 40S RIBOSOMAL PROTEIN S27 10 96 IPR000592 GO:0003735|GO:0005840|GO:0006412
Apr6g1391 97 SUPERFAMILY Zn-binding ribosomal proteins 41 95 IPR011332 GO:0006412
Apr6g1391 97 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 10 96 - -
Apr6g1391 97 Hamap 30S ribosomal protein S27e [rps27e]. 35 95 IPR000592 GO:0003735|GO:0005840|GO:0006412
Apr6g1391 97 Pfam Ribosomal protein S27 41 95 IPR000592 GO:0003735|GO:0005840|GO:0006412
Apr6g1391 97 ProSitePatterns Ribosomal protein S27e signature. 49 81 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1391 Apr-Chr6 21140999 21150125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1391 12 97 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 2.17e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1391 K02978 - gmx:100499804 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1391 6 21140999 21150125 Apr6g1391 6 21140999 21150125 ECH