Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1384 ATGAGCACCAACAATAGCTCTCTCTTCCCAGTCTCACCTGGGCAAATAAACACTTCCCAATTTATTAATAGCCAAGATCCACCTCAGCCTATACATCAAGGTAAACTATTATTACCAGGTAACAATGAAAGGAAAAAACACTATAGAGGAGTTAGACAAAGACCATGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAAAAAGCGGCAAGAGTGTGGCTTGGCACGTTTGACACGGCAGAAGCTGCAGCTGCTGCTTATGATGCGGCTGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAACTCGCAGCTTTACCAACGGATTCATCAACCGCTATTAATGCTTCTGTTTCTTCACAATCTGCTTCTCTTCCACCGCATGTTGGTGATCAAAGTCAACAACCTGCTACTCTTCCAATGCCATTGTCAGAAGAAGGGTTCCCAAACCTGATGCAGTATGCACAAGTGCTGTGTAGTAGGGATGATGATGATCTTCAACGTGCTGCTTCGGGTCTTTACTATCATCATCATCATCACAATGAGCCCTTTCTTTATGGGTCCTCACAACCACCTTTTTTCTTGTCTTCATCGTCATCAGCGATGCCAATGTCAACCTCTAAGACTGTTGTGCCTGATGATCAATGGGTTGATGGAGGTCATGATTCTTCTTGGGTTTTTGATCAAGGGGGCAGTGGTTTTGATGAGAGTAATAGGAGGGGATCATAG 738 0.4417 MSTNNSSLFPVSPGQINTSQFINSQDPPQPIHQGKLLLPGNNERKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGNKAKLNFPELAALPTDSSTAINASVSSQSASLPPHVGDQSQQPATLPMPLSEEGFPNLMQYAQVLCSRDDDDLQRAASGLYYHHHHHNEPFLYGSSQPPFFLSSSSSAMPMSTSKTVVPDDQWVDGGHDSSWVFDQGGSGFDESNRRGS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1384 245 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 14 217 - -
Apr6g1384 245 MobiDBLite consensus disorder prediction 1 30 - -
Apr6g1384 245 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Apr6g1384 245 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Apr6g1384 245 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Apr6g1384 245 MobiDBLite consensus disorder prediction 1 38 - -
Apr6g1384 245 MobiDBLite consensus disorder prediction 205 245 - -
Apr6g1384 245 PANTHER DNA-BINDING DOMAIN 14 217 IPR044808 GO:0003700|GO:0009873
Apr6g1384 245 MobiDBLite consensus disorder prediction 120 144 - -
Apr6g1384 245 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Apr6g1384 245 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Apr6g1384 245 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Apr6g1384 245 CDD AP2 46 106 IPR001471 GO:0003700|GO:0006355
Apr6g1384 245 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Apr6g1384 245 MobiDBLite consensus disorder prediction 120 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1384 Apr-Chr6 20994927 20997090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1384 23 177 AP2-EREBP Transcription Factor Family AT5G13330 52.500 1.61e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr6g1384 AP2 9.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1384 - - gmx:100806383 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1384 6 20994927 20997090 Apr2g1118 2 17448730 17452169 ECH
Apr6g1384 6 20994927 20997090 Apr6g1384 6 20994927 20997090 ECH
Apr4g1537 4 16659586 16661424 Apr6g1384 6 20994927 20997090 ECH
Apr6g1384 6 20994927 20997090 Apr4g1537 4 16659586 16661424 PCT