Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1382 ATGCTACCAACAAGAGCTAACAACACTCACAACGTTCCTTGGATGGAACCCCAACACGAAGAAGAGAAAGCATGGACCAGAACTAACATTAATAACGATGACAACACTAATCACCACAGAAACGACGTCGTTATGGATGCTGCTGCTCTTCTCTCCTTCAAATCCATGCTGGAAGTGGAAGGTGACTGGTACATGAACCCGCCTCACCAGGACCTTCTCCAAAACGACGCGTCGTTTCTGATGGAGCCTTTAGATTCCTCTTCTTCTGCACCCTCCTTCACTCTCGACCCAACTAAACCGTCCTTCCCTTCTTTCTTCAATGTTAATGCCAACAACCCCTTCGACAATGCCTTCGATTTGGGTTCTAATAGCGGTTTCCTCGCTCCGTTTCCTTCTTCCAGTTCCCCTGTTCTCTTCTTGCCCCTCGAACTGAGTTCGAACCCCGAGTTCGCGGCAACTCGTGCTGCCCAACTCAGTGCCGGCGAGTTTCCTCAAGAGGGAGCTTTCGGCGCTTCGGACGTTCCGTTGTTGAGCACGGCTAAGGTTCTGAGGCCACTCGAGGAGGTTCCTCCGGTGGCTGCGCCGCCTACTCTGTTTCAAAAGCGGGCCGCGCTCCATGGCGGTCACAGCGGGGCCGGGAAGTTGGGGGAATTGGAGGTTTCGGTGCCACGGTGGTTCGGATTGGAGAGGAAGAGTGGTAAAGAAGGAGAGGTTGAGGAAGGGTTGAATTATGAGTCTGATGAGGTTGTAAAGTTGGAGGAGAATGGGGGCAATAATTTGAATGCAAACAACAATGATAATGATAATTGTGTTAATAATAATAAGAAGAAGAAGAATAATAATGGTGTCGATGGTGGAGAACAGAAGGGGAAGAAGAAGGGGTTGCCAGCGAAGAATCTCATGGCTGAGAGGCGGCGTAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTACTTCAGCGGATTAATGAGCTTCATAATGAGCTAGAGTCAAGCTCGCCTAGCTCATCGCTTCCACCTGTGACGCCCACCCTGCCGATCCTTCCCTGCCGGGTGAAGGAAGAACTGTGTCTGAGCTCTTTGCCAAGCCCAAAACACCAATCAGCAAAGGTGGAGGTTAAGGTAAGGGAAGGGAGAGCTGTCAATATCCACATGTTTTGTGGCCGCAGACCAGGTCTTTTGCTTTCCACCATGAGGGCATTGGATAACCTCGGATTGGATGTTCAGCAGGCTGTTCTCAGCTGTTTCAATGGTTTTGCTTTAGACGTGTTTAGAGCTGAGCAATGCAGAGGTCAGGATGTCCTCCCTGAGAAAATTAAAGCAGTGCTGTTGGACACAGCAGGTTCCCATGGTATGATTTGA 1437 0.4962 MLPTRANNTHNVPWMEPQHEEEKAWTRTNINNDDNTNHHRNDVVMDAAALLSFKSMLEVEGDWYMNPPHQDLLQNDASFLMEPLDSSSSAPSFTLDPTKPSFPSFFNVNANNPFDNAFDLGSNSGFLAPFPSSSSPVLFLPLELSSNPEFAATRAAQLSAGEFPQEGAFGASDVPLLSTAKVLRPLEEVPPVAAPPTLFQKRAALHGGHSGAGKLGELEVSVPRWFGLERKSGKEGEVEEGLNYESDEVVKLEENGGNNLNANNNDNDNCVNNNKKKKNNNGVDGGEQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINELHNELESSSPSSSLPPVTPTLPILPCRVKEELCLSSLPSPKHQSAKVEVKVREGRAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVLSCFNGFALDVFRAEQCRGQDVLPEKIKAVLLDTAGSHGMI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1382 478 Coils Coil 333 357 - -
Apr6g1382 478 Pfam Helix-loop-helix DNA-binding domain 301 343 IPR011598 GO:0046983
Apr6g1382 478 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 86 478 - -
Apr6g1382 478 MobiDBLite consensus disorder prediction 280 300 - -
Apr6g1382 478 MobiDBLite consensus disorder prediction 256 279 - -
Apr6g1382 478 PANTHER BHLH TRANSCRIPTIONAL FACTOR 86 478 - -
Apr6g1382 478 Gene3D - 287 358 IPR036638 GO:0046983
Apr6g1382 478 CDD bHLH_AtAMS_like 297 352 - -
Apr6g1382 478 CDD ACT_UUR-ACR-like 408 467 - -
Apr6g1382 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 362 IPR036638 GO:0046983
Apr6g1382 478 SMART finulus 300 349 IPR011598 GO:0046983
Apr6g1382 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Apr6g1382 478 MobiDBLite consensus disorder prediction 255 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1382 Apr-Chr6 20897182 20901537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1382 53 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.862 7.44e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr6g1382 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1382 - - tcc:18601120 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1382 6 20897182 20901537 Apr6g1382 6 20897182 20901537 ECH
Apr4g1554 4 16972668 16976431 Apr6g1382 6 20897182 20901537 ECH
Apr4g1554 4 16972668 16976431 Apr6g1382 6 20897182 20901537 PCT