Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1378 ATGGCTCTCTCCGACTCAGACCCTTCGCGGCGTCATTCTCTGATTCCGAGCCACCTCTATTCCTCTTCCTCTTCCTCTTCGAGTTTGATGGTTCATTCACCGAGTGAGCCTAGAAATGGTATAAAGATGTTTTCGCCGTCTTTCTATGCGGCTTGCACCGTTGGTGGAATCCTCAGCTGTGGCCCCACTCACACCGCAACCACACCTCTTGATGTTGTCAAATGTAACCTACAGATTGACCCGGTCAAGTACAAGAGCACAACCAATGGATTTGGAGTTATATTCAAGGAGCAAGGACTGAGGGGCTTTTTCCGCGGTTGGGCACCTACCCTTGTCGGTTACGGTGCACAGGGTGCCTTCAAATATGGATTCTATGAGTTCTTTAAGAAATACTATTCTGATATTGTTGGCCCAGAGTATGCAACAAAGTATAAGACCTTGATCTACCTTGCTGGTTCAGCATCTTCTGAGTTAATTGCAGATGTTGCACTTTGCCCATTTGAGGCCGTGAAGGTTCGAGTCCAAACTCAACCTGGTTTTGCTAGAGGCCTTGCTGATGGCCTTCCAAAATTGGTCAGAACTGAAGGAGTCTCAGGGTTGTACAAGGGAATTGGGCCTCTGTGGGGAAGACAGGTTCCATATACAATGATGAAGTTTGCTTCTTATGAGAACATAGTTGAGATGATCTATAAGCATGCCATCCCCAAACCAAAGGATGAATGCAGCAGTTCCTTGCAACTCGGAGTGAGTATTGTAGGTGGATACATGGCTGGTATATTATGTGCAATTGTGTCTCATCCTGCAGACAACCTCGTCTCTTTCTTGAACAATGCCAAAGGGGCAACAGTTAGTGATGCTGTAAAGAAGTTTGGATTATGGGGTCTTTTTACCCGTGGTCTTCCTCTTCGTATTCTTATGATTGGAACTCTCACTGGAGCTCAATGGGGAATTTATGATTCATTCAAGGTTTTTGTAGGACTGCCAACTACTGGTGGTGTTGCTCCTGCTGTTCCTGCTGTTCCTGCTGTTCCTGCTCCGGCTTCTGCTGCTGAACTTGCAAAGGTGTAA 1068 0.4644 MALSDSDPSRRHSLIPSHLYSSSSSSSSLMVHSPSEPRNGIKMFSPSFYAACTVGGILSCGPTHTATTPLDVVKCNLQIDPVKYKSTTNGFGVIFKEQGLRGFFRGWAPTLVGYGAQGAFKYGFYEFFKKYYSDIVGPEYATKYKTLIYLAGSASSELIADVALCPFEAVKVRVQTQPGFARGLADGLPKLVRTEGVSGLYKGIGPLWGRQVPYTMMKFASYENIVEMIYKHAIPKPKDECSSSLQLGVSIVGGYMAGILCAIVSHPADNLVSFLNNAKGATVSDAVKKFGLWGLFTRGLPLRILMIGTLTGAQWGIYDSFKVFVGLPTTGGVAPAVPAVPAVPAPASAAELAKV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1378 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 144 228 IPR018108 -
Apr6g1378 355 MobiDBLite consensus disorder prediction 15 34 - -
Apr6g1378 355 Pfam Mitochondrial carrier protein 147 232 IPR018108 -
Apr6g1378 355 Pfam Mitochondrial carrier protein 49 133 IPR018108 -
Apr6g1378 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 47 131 IPR018108 -
Apr6g1378 355 Gene3D Mitochondrial carrier domain 47 325 IPR023395 -
Apr6g1378 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 324 IPR018108 -
Apr6g1378 355 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 22 336 IPR044677 GO:0005315|GO:1990547
Apr6g1378 355 PANTHER PHOSPHATE CARRIER PROTEIN 22 336 - -
Apr6g1378 355 SUPERFAMILY Mitochondrial carrier 50 319 IPR023395 -
Apr6g1378 355 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1378 Apr-Chr6 20856533 20859987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1378 25 347 Chloroplast and Mitochondria Gene Families AT5G14040 75.232 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1378 K15102 - gmx:100804257 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1378 6 20856533 20859987 Apr6g1378 6 20856533 20859987 ECH
Apr4g1558 4 17009923 17013399 Apr6g1378 6 20856533 20859987 ECH
Apr4g1558 4 17009923 17013399 Apr6g1378 6 20856533 20859987 PCT