Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1316 ATGTCCTTGCTAACGGTGGCGCACCAAAGTGGGTCAGGCGAGTACACCCGGTTCACGGGGCGGCGCGGCGGCGGTGATGATGATGAGGAATATGGTTATGGACATGATGGTGATGGTGGTGGAAGTTCTGGGGTGTCTGAGTCACTAGGATTCAGCAACCAAGGGGTGAATGTATCAGGGTACGATGTGGATCCAGAGTTGAAGGAAATGGTTTCAGCTTTGACACACGTGGTGTCATCAGGGCCTGGCCAGAGGAACAGCACCGAATGGGTCCAGGAAAGTGGTTTTCCTATGATGTCAGGTTTTGGACATGCATCTTCTCTTTCACGTTTGTCTTCTTTCCCTTCCTCTTCTTCTTCTTCTGCCTCATGGGTTGGCCACAAGAGAGGGCGTGAAGAAGAAGAGAGTGGTTCTTCTCATCACTTGATGCAACATCAAGGTGCTCATAGACTCTTCAGATCCATTGGTGACTTCATGGTACCTTCTCAAGGCGACTCATCATCAGTGGCAGAAGAAGTCCCCACCACCGCAACAACAACCGTAACTACCACCGCCACCGCTGTGGCAGCGGCCGAAACGGCTTCATATGAAGAAGGAGGTGAAAGGAGGAGAAGGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCTGCAGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACGTTTGATACAGCAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTAAGGTTCAGAGGTAACAGAGCAAAACTAAACTTCCCTGAAAATGTTAGAGCAGTTCCACCAGTTCAACCTTTTCCAGCCACTAGGTTAACCATTTCTGATCCCTCTAACACCCAATTCCGGCCTCTCACTGCGGCCTCAGCCGCCGCGCCGCCACCATTCATTCAGCAGCAGCCACAACAAATTCAGGCGTCCTCTGACTTGATCAGAGACTACTGGCAATATTCTCAGCTTCTACAGAGTTCTGGTGACTTTCAACAACCTCAACATCATCAACAACAACAGCAACACCCTTCTAGTTTGCTTCAACAGTGGTACTATAATGCACAATTGGCTTCACTTCAATCACCTTCATTGTCTTCTTCTATCTCACCTACACCATTCCATTCATTTTCAACATCTACTCAATTTTCCTCTGCTTCATCACTTCCCCTGTTTTCATCTCAACAAATGAACCTTTACCGGCCACCGGAAGGCGGCAGCGGAGGCGGCGGTTCGGGGTTTCCGCCGTCCACATGGTCAGATACTAGTGGCCATCCACCACCTTCTGGTTGA 1302 0.5015 MSLLTVAHQSGSGEYTRFTGRRGGGDDDEEYGYGHDGDGGGSSGVSESLGFSNQGVNVSGYDVDPELKEMVSALTHVVSSGPGQRNSTEWVQESGFPMMSGFGHASSLSRLSSFPSSSSSSASWVGHKRGREEEESGSSHHLMQHQGAHRLFRSIGDFMVPSQGDSSSVAEEVPTTATTTVTTTATAVAAAETASYEEGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAVPPVQPFPATRLTISDPSNTQFRPLTAASAAAPPPFIQQQPQQIQASSDLIRDYWQYSQLLQSSGDFQQPQHHQQQQQHPSSLLQQWYYNAQLASLQSPSLSSSISPTPFHSFSTSTQFSSASSLPLFSSQQMNLYRPPEGGSGGGGSGFPPSTWSDTSGHPPPSG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1316 433 MobiDBLite consensus disorder prediction 416 433 - -
Apr6g1316 433 MobiDBLite consensus disorder prediction 107 125 - -
Apr6g1316 433 Gene3D AP2/ERF domain 204 264 IPR036955 GO:0003700|GO:0006355
Apr6g1316 433 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 66 399 - -
Apr6g1316 433 MobiDBLite consensus disorder prediction 1 16 - -
Apr6g1316 433 SUPERFAMILY DNA-binding domain 205 263 IPR016177 GO:0003677
Apr6g1316 433 PANTHER DNA-BINDING DOMAIN 66 399 IPR044808 GO:0003700|GO:0009873
Apr6g1316 433 SMART rav1_2 205 268 IPR001471 GO:0003700|GO:0006355
Apr6g1316 433 CDD AP2 213 264 IPR001471 GO:0003700|GO:0006355
Apr6g1316 433 MobiDBLite consensus disorder prediction 1 51 - -
Apr6g1316 433 MobiDBLite consensus disorder prediction 107 146 - -
Apr6g1316 433 MobiDBLite consensus disorder prediction 397 433 - -
Apr6g1316 433 MobiDBLite consensus disorder prediction 126 140 - -
Apr6g1316 433 Pfam AP2 domain 205 254 IPR001471 GO:0003700|GO:0006355
Apr6g1316 433 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700|GO:0006355
Apr6g1316 433 PRINTS Ethylene responsive element binding protein signature 228 244 IPR001471 GO:0003700|GO:0006355
Apr6g1316 433 ProSiteProfiles AP2/ERF domain profile. 205 262 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1316 Apr-Chr6 18709066 18710936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1316 197 276 AP2-EREBP Transcription Factor Family AT2G33710 72.500 7.28e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr6g1316 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1316 - - gmx:100817436 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1316 6 18709066 18710936 Apr6g1316 6 18709066 18710936 ECH
Apr4g1537 4 16659586 16661424 Apr6g1316 6 18709066 18710936 PCT
Apr6g1316 6 18709066 18710936 Apr8g2097 8 31506385 31508717 PCT