Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1312 ATGGCCACTAACATTGATCAACCAGCGAAGCTACGATGGGGAGAACTGGAAGAGGACGATGGAGAAGATCTTGACTTTCTTCTCCCGCCAAGGCAAGTCATAGGCCCAGACGAAAACGGCATTAAGAAGGTAATCGAGTACAAGTTCGATGACGATGGAAACAAGGTCAAGATCACCACCACCACGCGCACCCGCAAACTCGCCAACGCCCGTCTCAGCAAACGCGCCGTTGAGAGACGCTCTTGGCCCAAGTTCGGCGACGCCGTCCACGAAGACGTCGGTAGCCGCCTCACCATGGTCTCCACCGAAGAGATCCTTCTAGAACGTCCCAAGCCTCTTGGTGCAAAAACGGAAGAGCCGAAGACTGCTGGAGATCCATTGGCTCAGTTTCAAAAAGGTGCTGTTCTTATGGTCTGCAGGACTTGTGGGAAGAAAGGTGATCACTGGACTTCAAGATGTCCATACAAGGATCTTGCCCCACCGTCTGAGGGATTTGTTGATAAGCCTGCGGCATCTGATGTTGTGGCTGCCACAACTGGTTCAACCAAGGCAGCGTATGTGCCTCCTGGAATGAGAGCAGGTGCTGAGAGGACTGGATCAGATATGCGGCGGAGGAATGATGAGAATTCTGTCCGGGTTACAAACCTCTCTGAGGACACACGAGAGTCTGATTTGCTTGAGCTGTTCCGTCCTTTTGGTCCTGTGAGCAGAGTATATGTTGCCATTGATCAGAAGACTGGCATGAGTAGGGGGTTTGGCTTTGTTAACTTTGTCAACAGGGAAGATGCACAAAGAGCTATCAGCAAACTCAATGGATATGGCTATGACAGTCTCATCCTTAGAGTTGAATGGGCCACCCCCAGAACAAACTAA 873 0.5109 MATNIDQPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGAKTEEPKTAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPAASDVVAATTGSTKAAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTRESDLLELFRPFGPVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAISKLNGYGYDSLILRVEWATPRTN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1312 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 10 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Apr6g1312 290 CDD RRM_eIF3G_like 210 285 IPR034240 -
Apr6g1312 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Apr6g1312 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 276 IPR000504 GO:0003723
Apr6g1312 290 MobiDBLite consensus disorder prediction 185 208 - -
Apr6g1312 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
Apr6g1312 290 Pfam Eukaryotic translation initiation factor 3 subunit G 32 158 IPR024675 -
Apr6g1312 290 PIRSF Transl_init_eIF-3_RNA-bind 2 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Apr6g1312 290 Gene3D - 178 290 IPR012677 -
Apr6g1312 290 SUPERFAMILY RNA-binding domain, RBD 201 289 IPR035979 GO:0003676
Apr6g1312 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Apr6g1312 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Apr6g1312 290 CDD eIF3G 39 157 IPR024675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1312 Apr-Chr6 18540852 18547856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1312 9 288 Eukaryotic Initiation Factors Gene Family AT3G11400 68.269 1.32e-149 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1312 K03248 - gmx:100818725 537.339