Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1309 ATGGCTGCCTCAACAATGGCTCTCTCTTCTCCGTCATTGGCAGGGCAAGCAATAAAGCATGCCCGATCCACCCCCGACCTTGGAAGTGGAAGGCTCACAATGAGGAAAGCAGTCACCAAAACTTCTGGAAGCCCATGGTACGGCCCAGACCGTGTCTTGTACTTGGGCCCACTCTCTGGCACTCCCCCATCCTACCTCACTGGTGAATTCCCAGGTGACTATGGCTGGGACACTGCTGGGCTTTCCGCTGACCCAGAGACATTTGCCAGAAACCGCGAACTTGAGGTCATCCACTGCAGATGGGCCATGTTGGGAGCCTTGGGCTGCGTCTTCCCCGAACTCTTGGCCCGCAATGGGGTCAAGTTCGGCGAGGCCGTGTGGTTCAAGGCTGGATCCCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCTCCCAAGTCATCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCCGGTGGGCCTCTCGGCGAGGTCACTGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAATTGAAGGTGAAGGAGATCAAGAATGGTAGATTAGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAGGCTATTGTGACCGGAAAGGGTCCTTTGGAGAACCTCGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGAATTGTGCAATGGCTGCCTCAACAATGGCTCTCTCTTCTCCGTCATTGGCAGGGCAAGCAATAAAGCATGCCCGATCCACCCCCGACCTTGGAAGTGGAAGGCTCACAATGAGGAAAGCAGTCACCAAAACTTCTGGAAGCCCATGGTACGGCCCAGACCGTGTCTTGTACTTGGGCCCACTCTCTGGCACTCCCCCATCCTACCTCACTGGTGAATTCCCAGGTGACTATGGCTGGGACACTGCTGGGCTTTCCGCTGACCCAGAGACATTTGCCAGAAACCGCGAACTTGAGGTCATCCACTGCAGATGGGCCATGTTGGGAGCCTTGGGCTGCGTCTTCCCCGAACTCTTGGCCCGCAATGGGGTCAAGTTCGGCGAGGCCGTGTGGTTCAAGGCTGGATCCCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCTCCCAAGTCATCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCCGGTGGGCCTCTCGGCGAGGTCACTGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAACTGAAGGTGAAGGAGATCAAGAATGGTAGATTAGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAGGCTATTGTGACCGGAAAGGGTCCTTTGGAGAACCTCGCTGACCACCTTGCTGACCCAGTCAACAAAAATGCTTGGGCCTATGCCACAAACTTTGTCCCTGGAAAGTGA 1584 0.5518 MAASTMALSSPSLAGQAIKHARSTPDLGSGRLTMRKAVTKTSGSPWYGPDRVLYLGPLSGTPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGKNCAMAASTMALSSPSLAGQAIKHARSTPDLGSGRLTMRKAVTKTSGSPWYGPDRVLYLGPLSGTPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNKNAWAYATNFVPGK* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1309 527 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 262 - -
Apr6g1309 527 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 265 527 - -
Apr6g1309 527 SUPERFAMILY Chlorophyll a-b binding protein 45 259 - -
Apr6g1309 527 Gene3D Chlorophyll a/b binding protein domain 53 255 - -
Apr6g1309 527 Gene3D Chlorophyll a/b binding protein domain 318 520 - -
Apr6g1309 527 Pfam Chlorophyll A-B binding protein 62 228 IPR022796 -
Apr6g1309 527 Pfam Chlorophyll A-B binding protein 327 493 IPR022796 -
Apr6g1309 527 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 262 IPR001344 GO:0009765|GO:0016020
Apr6g1309 527 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 265 527 IPR001344 GO:0009765|GO:0016020
Apr6g1309 527 SUPERFAMILY Chlorophyll a-b binding protein 310 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1309 Apr-Chr6 18460624 18468268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1309 266 527 Chloroplast and Mitochondria Gene Families AT2G34420 87.218 1.20e-162 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1309 K08912 - ncol:116257149 930.628