Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1294 ATGTCCTTCCGCAGTATTGTTCGTGAGGTAAGGGACGGATTTGGAAGCTTATCAAGGCGGGGTTTTGAGGTAAGGCTTCCTGGTCATCATAAGGGCAAGTCAAACAGTTCGGTCCACGAGTTGCACAAACACCCACCAGTTATACAGAACAGTCGATGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAAAAGATTGGAAGAAAGTGAGAGTACGTGGCCTGCTCGTAAACATGTGATTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACAAGTCCTGAGTTCAGTGGGAAGATTACTTTTCCTGTCTCACTGAAGCAGCCCGGTTCAAGGGATGGAGCAATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCACCTATTCCTTTGTCTTAGCCCTGTTGTTCCTGCAGCACTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCGAAGCGAACAAGAAGAACAACGTGCACAGAGTACATTATATCAATGGATGCAGATAACATATCAAGATCCAATAGCACTTACATTGGAAAACTAAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATTCTCAGCTGTCTTCTCCAGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAGCTCCCTAGTGGCAGCTACAATATTGCACAGATCATGTATGAGTTGAATGTCCTTGGAACTAGGGGCCCACGCAGGATGAACTGCACCATGTACTCAATCCCTACATCATCCCTTGAACCTGGGGCCACTGTTCCAGGCCAGCCAGAGCTCCTTCCTCGCTCCCTCGAAGACTCCTTCCGGAGCATATCCTTCTCAAGATCAATCGACAACTTCACTGAGTTTAGCAGCTCTAGATTCTCAGACATTGTTGTGGCCGGAAATGAAGAGAATGAGGGAAAGGAAAGACCTCTAATTCTTAAGAACAAAGCACCAAGATGGCATGAGCAGCTTCAATGTTGGTGCCTCAACTTCAGGGGAAGGGTGACTGTTGCCTCTGTCAAGAATTTTCAGCTCATTGCTGCTCCGCAGCCTCCAGCCGGCGCCCCTACTCCATCATCTCAGCCAACACAATCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTGGGCAAGGATATGTTTACTATGGACTATAGATATCCCCTATCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1290 0.4543 MSFRSIVREVRDGFGSLSRRGFEVRLPGHHKGKSNSSVHELHKHPPVIQNSRWASLPPELLRDVIKRLEESESTWPARKHVIACAAVCKSWREMCKEIVTSPEFSGKITFPVSLKQPGSRDGAIQCFIKRDKSNLTYHLFLCLSPVVPAALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSNSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSSPGRSRRFYSKKVSPKLPSGSYNIAQIMYELNVLGTRGPRRMNCTMYSIPTSSLEPGATVPGQPELLPRSLEDSFRSISFSRSIDNFTEFSSSRFSDIVVAGNEENEGKERPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAPQPPAGAPTPSSQPTQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1294 429 Pfam Tub family 114 424 IPR000007 -
Apr6g1294 429 PANTHER TUBBY-RELATED 1 429 - -
Apr6g1294 429 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
Apr6g1294 429 Pfam F-box domain 53 99 IPR001810 GO:0005515
Apr6g1294 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Apr6g1294 429 Gene3D Tubby Protein; Chain A 110 429 IPR025659 -
Apr6g1294 429 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Apr6g1294 429 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Apr6g1294 429 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Apr6g1294 429 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Apr6g1294 429 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Apr6g1294 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Apr6g1294 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Apr6g1294 429 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Apr6g1294 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Apr6g1294 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 429 - -
Apr6g1294 429 Gene3D - 48 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1294 Apr-Chr6 18150933 18155334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1294 1 429 TUB Transcription Factor Family AT1G76900 68.467 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr6g1294 Tub 8.6e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1294 K19600 - zju:107421669 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1294 6 18150933 18155334 Apr6g1294 6 18150933 18155334 ECH
Apr6g1294 6 18150933 18155334 Apr8g2113 8 31642398 31646300 PCT