Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1292 ATGCAGCTAGGAGAGCCAAGTGTGCCGGAGATCTCCTCCCCTAACACGGCGGTGACGGCGGAACCGCCGGAGGAAACGGCACATGAAGGTGTCAACGGTGGTGAGATGGTTGGGATTGACGTTGATGCAAATTCTAGTGAAGATAAGGGAATAGAAGGAGGAGGAGATGAAAGTAACAAGATCAACTTTGGAGGAAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTTAGATATGGATGCAGTGTTTCGGGATTCAAGTCTTAAAGCTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGCAGAACTTGGATATCACCGAAGTGCAAAGAAGTGCAAGGAAAAATTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAGAACAAAAGTGGCAAATCACATGGAAAAACCTATAAGTTTTTTGATCAATTACAAGCCCTTGAGAACCAATTCACAGTCTCATACACTCCAAAATCACAAGCTATTTTGACAACAACTCTCTCTAATGTCACCACTACTTTTCCTTTCACAAACCCTACACTCATTTCTCCTTCACCACCGACCAACGCTACCACCACCACCACCACATCCATGACCAACCCTCCAAACCCATCACCACCACAAAACCACAGCAACCACAATGTTCCACATTCTTTTCCCAACATGAACAACCTTTTCTCAACCACCACCTCCACGTCTTCCTCCACAGCATCTGATGAAGACTTGGAAGAGAGGTATAAGAGAAAGAGAAAGTGGAAGGACTACTTCAAGAGGCTCACGAGGAAGGTCCTGCTCAAGCAAGAGGAAATGCAAAATAAGTTCTTGGAAGCCATGGACAAAAGGGAGAGAGATCGGTTGGCACAACAAGACAATTGGAGAATGCAAGAAATAGCAAGAATCAATAGGGATCATGAGATTCTTATTCAAGAAAGATCAACAGCTGCAGCCAAAGATGCTGCAGTGATCGCATTGTTGCAAAATTTGTCTGGCCAGCAAAATCCCATGCAACTATTACCACCATCATTCGCACTGCCATCAGTATCACAAATAGAGCCATCACAACAGAAGGAAATAATTCCACAAACACAATCACCGATATTAACGCCAAACAACAATTTTGAAATCAAGGGAGCGAATAATGGTCACAGTACTACTAGTACTATTACTACTGCTTCTCTAGTAAGCTCTTCTTCTTCTAGGTGGCCAAAAGCTGAAGTTCATGCTCTGATAAGGTTAAGGACAACTCTTGAAATCAAGTATCAAGAAAATGGACCGAAAGCTCCGTTGTGGGAAGATATATCAATCGGAATGCAAAGGCTTGGGTACAACCGGAGTGCAAAGAGATGCAAAGAGAAGTGGGAAAACATTAACAAGTACTTCAAGAAAGTGAAGGAGAGTAACAAAGAAAGGCCTGAAGATAGTAAAACGTGTCCTTATTTTCATGAGCTTGATGCTTTATACAAAGAAAAGAGCAAATCCCAGAACCCCTTTGGCATTTCATTCCAGAATGTGATACCCAATGAGATGATGATGATGGAGCCGTTGATGGTGCAACCGGAGCAGCAATGGAGGCCTCCACCTGAGTCGTTGGAAGAGGGTATAGGGAAGGAGAATGCAAATGAGTGTCAAGAAAAAGAAGAAGAAGATGGTGATGATGATGCTGAAGAATATGGAGATAGTGTGGAAGATGAAGGTGCAAGCCTTTCTGAGATTGCAACAAATAATTAA 1743 0.4314 MQLGEPSVPEISSPNTAVTAEPPEETAHEGVNGGEMVGIDVDANSSEDKGIEGGGDESNKINFGGNRWPRQETLALLKIRLDMDAVFRDSSLKAPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENQFTVSYTPKSQAILTTTLSNVTTTFPFTNPTLISPSPPTNATTTTTTSMTNPPNPSPPQNHSNHNVPHSFPNMNNLFSTTTSTSSSTASDEDLEERYKRKRKWKDYFKRLTRKVLLKQEEMQNKFLEAMDKRERDRLAQQDNWRMQEIARINRDHEILIQERSTAAAKDAAVIALLQNLSGQQNPMQLLPPSFALPSVSQIEPSQQKEIIPQTQSPILTPNNNFEIKGANNGHSTTSTITTASLVSSSSSRWPKAEVHALIRLRTTLEIKYQENGPKAPLWEDISIGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKERPEDSKTCPYFHELDALYKEKSKSQNPFGISFQNVIPNEMMMMEPLMVQPEQQWRPPPESLEEGIGKENANECQEKEEEDGDDDAEEYGDSVEDEGASLSEIATNN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1292 580 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 24 568 - -
Apr6g1292 580 MobiDBLite consensus disorder prediction 1 20 - -
Apr6g1292 580 MobiDBLite consensus disorder prediction 215 242 - -
Apr6g1292 580 CDD GT1 405 469 - -
Apr6g1292 580 ProSiteProfiles Myb-like domain profile. 60 124 IPR001005 -
Apr6g1292 580 PANTHER - 24 568 - -
Apr6g1292 580 MobiDBLite consensus disorder prediction 549 568 - -
Apr6g1292 580 ProSiteProfiles Myb-like domain profile. 404 462 IPR001005 -
Apr6g1292 580 Gene3D - 406 467 - -
Apr6g1292 580 Gene3D - 68 129 - -
Apr6g1292 580 CDD GT1 66 131 - -
Apr6g1292 580 SMART sant 402 464 IPR001005 -
Apr6g1292 580 SMART sant 64 126 IPR001005 -
Apr6g1292 580 MobiDBLite consensus disorder prediction 182 249 - -
Apr6g1292 580 MobiDBLite consensus disorder prediction 1 64 - -
Apr6g1292 580 MobiDBLite consensus disorder prediction 182 204 - -
Apr6g1292 580 MobiDBLite consensus disorder prediction 524 580 - -
Apr6g1292 580 Pfam Myb/SANT-like DNA-binding domain 404 491 IPR044822 -
Apr6g1292 580 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1292 Apr-Chr6 17976372 17979869 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1292 56 528 Trihelix Transcription Factor Family AT1G76880 50.794 8.08e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr6g1292 Myb_DNA-bind_4 1.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1292 - - aprc:113867330 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1292 6 17976372 17979869 Apr6g1292 6 17976372 17979869 ECH
Apr6g1292 6 17976372 17979869 Apr8g2114 8 31664040 31667411 PCT