Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1290 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAAGCTCTGGAGATGCAGTGGCAGGTTCTGCTGTTGCTGCTGCATCAGGAGGAGCTCATGAAGGTGCTGACGTGGCAGCAGGTGGTGGTGGTGGATCAAATTCAGGGGATGATGAAAGGGGTAGAGGAGAAGAAGGTGACAAGAGCTTTGGCGGCAATAGGTGGCCAAGGCAAGAGACTCTGGCCTTGTTGAAGATACGGTCAGATATGGACGTGGCTTTTAGAGATGCAAGTGTTAAGGGTCCCTTGTGGGAAGAGGTTTCTAGGAAGCTGGCAGAGCTTGGGTACCACAGAAATGCCAAGAAGTGCAAAGAGAAATTTGAGAATGTTTACAAGTACCACAAGAGAACCAAGGAAGGAAGAAGTGGGAAATCAGAAGGCAAAACATATCGGTTTTTTGATCAATTAGAAGCCCTTGAAAACAATCCTGCAATCCAATCACCAACACCAACTTCAAAACCACCACTACAAACAATAGCACTACCTGCAACACCAGTATCAATAGTGGCATCAAGTGCATCATCATTGCCGCTTCCAACCACAACAGTGCCATTGCAACCAGTGGCTAATAACACCACTACTATTGCATCAACAACTACACTCCCTATGGCTGTGTCTCAAGGCATTCTCAACATAATCCCATCAACAATAAACATCACAACCCCTTCATACCCATCATCAAACCCTACATATTTCACAACCCCAACACCAAACCCTACTAGTAAGAACCCTCCAAACACCATTAACCCATCTTCATTTCCCAATATCCCCACTGATCTATTGTCCAATTCAAGTTCTTCCTCAACTTCCTCGGAGGAAACACTGGAAGGAGGGGGAACAAGGCGCAAGAGAAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTAATGAAGGAAGTGATAGAGAAGCAAGAGGAGCTACAAAGGAGGTTCTTGGAAGCCATAGAGAAAAGAGAACATGAGAGAGTGGCAAGAGAAGAAGCATGGAGAATGCAAGAGATGCAAAGAATCAACAGGGAAAGGGAAATTCTTGCACACGAGAGGTCCATAGCTGCAGCAAAAGACGCTGCTGTTATGGCATTTTTACAAAAGATAGCTGAACAACAGCAGCAACAAATTAATCTTGAGCCAGCATTGAATAACAACAACAACATCAACATTGTTCCACCAGTTCAACAAGCAACTACAGCACCAACAACAGTACAACAAACACAAACAACAGCGATTCCTGAGGCCCCACCAGCGCAGTCTTTGGCCCCACAACAACAACATCATCAGGTGCATCAGCAGCAACAACAAGTGGTGACCAATGTGGAAATTGTAAAAGCTGATAACAACGGTGAGAATTTGATGATGGGAACGAGCTCTTCAAGGTGGCCAAAAGTGGAGGTTCAGGAACTGATAAATCTGAGAACGAGCCTGGAAACAAAGTACCAAGAAAGTGGGCCAAAAGGGCCACTATGGGAGGAGATCTCAACGTTGATGAAGAAAATGGGGTACAACCGGAGTGCTAAAAGATGCAAAGAGAAGTGGGAGAACATCAACAAATACTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGGCCGGAAGATTCCAAAACTTGTCCCTATTTTCACTTGTTGGAAGCTCTATACAGGGAGAAAAACAAGGGAGAGGGCCAAATGAAGCCTGAGAGCATGATGGCACCACTTATGGTGCCCCCGGAGCAGCAATGGCCTCCCCAGCATGCGGCGGTGCCGGAGGTAACCATGGAAGATGCCCAAAATGACCCCATGGACCTGCAGCACCACAATGAGGAGGATGAGGATGAAGAAATGGACAAGGAAATTGGAGATGATGATGAGGATGAAGATGATGATGGAGGTGATAATTATGAAATAGTAGCGAGGCCCTTCCCGTAG 1935 0.4625 MLGDSAVLGTGGGSSGDAVAGSAVAAASGGAHEGADVAAGGGGGSNSGDDERGRGEEGDKSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLEALENNPAIQSPTPTSKPPLQTIALPATPVSIVASSASSLPLPTTTVPLQPVANNTTTIASTTTLPMAVSQGILNIIPSTINITTPSYPSSNPTYFTTPTPNPTSKNPPNTINPSSFPNIPTDLLSNSSSSSTSSEETLEGGGTRRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREHERVAREEAWRMQEMQRINREREILAHERSIAAAKDAAVMAFLQKIAEQQQQQINLEPALNNNNNINIVPPVQQATTAPTTVQQTQTTAIPEAPPAQSLAPQQQHHQVHQQQQQVVTNVEIVKADNNGENLMMGTSSSRWPKVEVQELINLRTSLETKYQESGPKGPLWEEISTLMKKMGYNRSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHLLEALYREKNKGEGQMKPESMMAPLMVPPEQQWPPQHAAVPEVTMEDAQNDPMDLQHHNEEDEDEEMDKEIGDDDEDEDDDGGDNYEIVARPFP* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1290 644 ProSiteProfiles Myb-like domain profile. 59 123 IPR001005 -
Apr6g1290 644 MobiDBLite consensus disorder prediction 579 644 - -
Apr6g1290 644 CDD GT1 65 130 - -
Apr6g1290 644 MobiDBLite consensus disorder prediction 49 64 - -
Apr6g1290 644 Coils Coil 301 328 - -
Apr6g1290 644 MobiDBLite consensus disorder prediction 608 634 - -
Apr6g1290 644 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 639 - -
Apr6g1290 644 PANTHER - 1 639 - -
Apr6g1290 644 MobiDBLite consensus disorder prediction 257 287 - -
Apr6g1290 644 CDD GT1 468 533 - -
Apr6g1290 644 MobiDBLite consensus disorder prediction 240 296 - -
Apr6g1290 644 SMART sant 466 528 IPR001005 -
Apr6g1290 644 SMART sant 63 125 IPR001005 -
Apr6g1290 644 ProSiteProfiles Myb-like domain profile. 468 526 IPR001005 -
Apr6g1290 644 Pfam Myb/SANT-like DNA-binding domain 468 555 IPR044822 -
Apr6g1290 644 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Apr6g1290 644 MobiDBLite consensus disorder prediction 1 66 - -
Apr6g1290 644 Gene3D - 67 128 - -
Apr6g1290 644 Gene3D - 470 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1290 Apr-Chr6 17890547 17894060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1290 56 583 Trihelix Transcription Factor Family AT1G76880 53.804 5.62e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr6g1290 Myb_DNA-bind_4 3.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1290 - - gmx:100804788 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1290 6 17890547 17894060 Apr8g2115 8 31690689 31694001 PCT