Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1286 ATGGAAGGGAATTTGTCACAGGGAGGTATGATTCAAGGTGGAGGTTCTTTTGGTGGTTTTGAAATGCCTGGATCAATGCGGGTTCATAGGCAAGCGCAGCATTCACATGCCATGAACCAGCATCAAACACATCCTTGTCAAGGGTCTTCAGTGCATTCCTCAGTTCATGACGGTTTTCCACTTACAATGGGAACCATGCAGAGCTGTGATCAGACTGTGTCAATGACTGAGTTTAGTCAAGGAGATAGAAACAAAAACTCACCAAGTGAGGAAGATGAGCCAAGCTTTGCTGAGGAAGGTGTTGATGGTCATCATGAAGCAGGTAGAGGGAGAAAGGGGTCGCCGTGGCAGCGAGTGAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACGGCTGTTTCTTACATAGGTGAGGATGGAACTTCTGATGGTGGCAGTGGGAGAAGAAAATTTGCAGTGCTACAGAAAAAGGGGAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGGGTTATCATGTTTCACCTCAGCAGTGTGAGGATAAATTCAATGATCTTAATAAAAGGTACAAAAAGCTTAATGATATGCTTGGAAGGGGAACTTCTTGTCAGGTTGTTGAAAATCCTGCTCTGTTGGATGTAATAGATTATCTTTCTGAGAAAGAAAAGGATGATGTTAGAAAAATATTGAGCTCAAAACACCTCTTCTATGAAGAGATGTGTTCTTACCATAATGGTAATAGATTGCATTTGCCCCATGATCCTGCTTTGCAACGGTCGCTGCAGTTAGCTCTACGAAATAGAGATGATCACGATGATGATATCAGAAGGTCCTATCACGATGATCATGATGAAGATGATCAAGATATGGAAACTGATGATCATGATGACTTTGAAGAGAATTATGCTTCCCATGGAGAGAATAGAGGAATCTTTGGTACATCAGGGGGATCTATGAAGAGATTAAAACACGGGCAAGGCCAAGAAGATACTATTACGTTTGGGAGTGCTTTAAACAGTCAAGAGTACAACAAAAGTTCATATCCTCAAATGGTACAATCTGATGTAAATCAAGCGTTACCTGAAAACATGAAAGCAGCTTGGGTACAGAAGCAATGGTTTGAATCTCGTTCGCTTCAATTAGAAGAACAGAAGTTACAAATTCAGGTTGAGTTGTTGGAACTAGAGAAACAAAAGTTCAAGTGGCAAAAGTTTAGTAAGAAAAAAGACCGGGAGTTGGAAAAGTTAAAGCTGGAGAATGAAAGAATGAAGGTAGAAAATGAACGTATTGCATTAGAACTAAAGCGAAAGGAAATGGGCACTGGCTTTAACTAG 1335 0.4112 MEGNLSQGGMIQGGGSFGGFEMPGSMRVHRQAQHSHAMNQHQTHPCQGSSVHSSVHDGFPLTMGTMQSCDQTVSMTEFSQGDRNKNSPSEEDEPSFAEEGVDGHHEAGRGRKGSPWQRVKWTDKMVRLLITAVSYIGEDGTSDGGSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDYLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDDDIRRSYHDDHDEDDQDMETDDHDDFEENYASHGENRGIFGTSGGSMKRLKHGQGQEDTITFGSALNSQEYNKSSYPQMVQSDVNQALPENMKAAWVQKQWFESRSLQLEEQKLQIQVELLELEKQKFKWQKFSKKKDRELEKLKLENERMKVENERIALELKRKEMGTGFN* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1286 444 Coils Coil 376 398 - -
Apr6g1286 444 MobiDBLite consensus disorder prediction 272 323 - -
Apr6g1286 444 MobiDBLite consensus disorder prediction 84 116 - -
Apr6g1286 444 MobiDBLite consensus disorder prediction 32 63 - -
Apr6g1286 444 MobiDBLite consensus disorder prediction 1 63 - -
Apr6g1286 444 Pfam Myb/SANT-like DNA-binding domain 118 243 IPR044822 -
Apr6g1286 444 Coils Coil 406 438 - -
Apr6g1286 444 Gene3D - 121 192 - -
Apr6g1286 444 MobiDBLite consensus disorder prediction 76 116 - -
Apr6g1286 444 PANTHER F16F4.11 PROTEIN-RELATED 1 444 - -
Apr6g1286 444 PANTHER FACTOR, PUTATIVE-RELATED 1 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1286 Apr-Chr6 17820604 17824169 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr6g1286 Myb_DNA-bind_4 3.1e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1286 - - gmx:100816474 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1286 6 17820604 17824169 Apr6g1286 6 17820604 17824169 ECH
Apr6g1286 6 17820604 17824169 Apr8g2116 8 31710479 31715254 PCT