Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1264 ATGGCAAAGGTAAGGGAGAAGCTATACATCACCGTTCCGAACCTTTTCCGGTGCCCAATCTCTATGGACGTAATGAGGTCTCCCGTAAGCCTGTGCACCGGCGTCACATATGATCGCTCCAGCATTCAGCACTGGCTCGACTCAGGTCATGACACGTGTCCCGCTACTATGCAAGTTCTTCCCTCCAAGGACTTCATCCCCAACCTCACCCTCCACCGCCTCATCCGTCTCTGGCTTCTCTCCGGCGAACCTTCGCCGGATTCCCGAACCTCCGGCGACCAACTCCGTGCTCTCCTCCGCGGAATCCAAACCGCCGACGAAAACCTCGCCGTTTTTCTCTCCAAGATCGCCGAATTCGCCAAACTTTCCGGTGAAAACCCCCGATTACTAGCCACCTTCCCTGGCTTTGACTCCGCCATCGTTCGCGCTCTTGCCAGAAGTGCTTCGCGGATCGACGCGACAGAAAACGCGATTTCAATTCTCGATTCAGTTTTCCGGGAAAACGGAGATTCAGCCGTCGCCGGAGAGAAAATCCGACGGTTGATTCTCGACGCTCGCGAAGAATGCTTCGTTTCGATGATATCCGTTTTGAGAAACGGCTCGTTGCGATCGAAGATTGAAGCGGTTAGGATATTGGAGTTTCTAGCCGGGGATTTCCAATCGAAGAAATCAATCGCCGAAACGCGAAGTTTGTTGTCGTTGCTCACGAGCGTTTTGAAGGACGGGGGAGAGGAGATAAACGACGCCGTTTTGTCGCTACTGGCTGTCGTTTCGGTGACTCAGTCAGCGAAGGTTGAACTTGTTAGGTGCGGACTCGTTGATGTGCTTTCGAAGATGTTGCGAAACTCGTCGTGTTCGTCGACGACGGCGGAGAGGTGCCTGAGGATGCTGGCGGTGGTGGCGACATGCGCGGATGGGAGGGCAGCAATGGCGGAGGAGCCGTCGTGCGCTATCGCGGTGGTGGAGAGGGTGCCGAAGGTGCCGAAGGCCGCAGCAGAGGATGCGGTGGTGGTGTTGTGGAGCCTGTGCTGTTTGTGCGGAAACGTTAAAGTGAGGGATGACGTGGCAAAGCGAAACGGCGTCGCGGTGATCCTTTTGGTTATGCAGAGGGGGTGGGAGGATCACGTGAGGGGCATGTGCGTCGATTTGATCAAGGTTTTGAGGGGTGCGTGCAAGAACCCGTTGGAACTGGGAAGCTATGACACCAAAACCACTCATATCAAACCTTGCTAA 1233 0.5523 MAKVREKLYITVPNLFRCPISMDVMRSPVSLCTGVTYDRSSIQHWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSGEPSPDSRTSGDQLRALLRGIQTADENLAVFLSKIAEFAKLSGENPRLLATFPGFDSAIVRALARSASRIDATENAISILDSVFRENGDSAVAGEKIRRLILDAREECFVSMISVLRNGSLRSKIEAVRILEFLAGDFQSKKSIAETRSLLSLLTSVLKDGGEEINDAVLSLLAVVSVTQSAKVELVRCGLVDVLSKMLRNSSCSSTTAERCLRMLAVVATCADGRAAMAEEPSCAIAVVERVPKVPKAAAEDAVVVLWSLCCLCGNVKVRDDVAKRNGVAVILLVMQRGWEDHVRGMCVDLIKVLRGACKNPLELGSYDTKTTHIKPC* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1264 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Apr6g1264 410 SUPERFAMILY ARM repeat 191 387 IPR016024 -
Apr6g1264 410 PANTHER WDSAM1 PROTEIN 6 410 IPR045185 GO:0061630
Apr6g1264 410 SUPERFAMILY RING/U-box 8 80 - -
Apr6g1264 410 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Apr6g1264 410 CDD RING-Ubox_PUB 16 58 IPR045210 -
Apr6g1264 410 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Apr6g1264 410 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Apr6g1264 410 Gene3D - 105 395 IPR011989 -
Apr6g1264 410 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1264 Apr-Chr6 17433632 17435134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1264 6 409 U-box Gene Family AT5G09800 39.183 1.69e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1264 - - gmx:100786235 587.8