Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1262 ATGGCAGATCTTGCTAGCTACGGGAATGCGAACCGTGACGTTGAACAAGCGCTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAGTATGGTCGCAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCATCCTTAATCTGGATTACAAGCAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGCGTCCTGAGAAGGACTATTTATCTTTTTCACTTATTTACAATAACGGAAAGCGATCACTTGATTTGATCTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCACTGATATCATCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTCATTCTTGATGATAGCAGAGACTTAACATCAAATAGTCCAAGTGAGAGTTCCGCTAGTGCATCACGAGACATCAGTTCTCCTGAGATTTCTGCTCGTCTCCCAAACACTTCACCAAAGTCCTTTCAACGTGACAATAAAATTTCTGAAAGTTCACATGCACCACCAGATCCAACAAACATGCAAGTGAAAGAATCTGGTTCAGATGCTTTTCGTGTTAGTGTATCAAGTGCCCACAGTACATCTAGTCATGGATCTGGACCAGATGACTATGATGCTCTGGGGGATGTGTACATATGGGGGGAGGTTATCTGCGAAAATGTTAAAGTTGGTGCTGATAAATATGTGAATTACTTAAGCCCAAGGGCAGATGTGCTCCTCCCGAGACCATTAGAATCTAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAAACATGCTTCTCTAGTAACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGGATGTGGTTCAACCTCATCTAGTTGAAGCATTGACTTCTACGGCTATTGATTTTGTTGCCTGTGGGGAGTTCCATTCTTGTGCTGTTACAATGGCTGGGGAATTATATACTTGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTTAGTCATTGGATACCGAAGAGAATTGCTGGTCCATTAGAGGGACTTCAAGTTGCATTCGTTGCTTGTGGTCCTTGGCACACGGCCTTGATAACTTCAACTGGGAAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTATCATATCCTAGAGAAGTGGAATCCTTATCAGGGTTGAGGACAATGGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTATTGTAGAGGTTATTGCAACACAATCCAGTACAAGTGCATCGTCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGGCTTAAACCAACTTGTGTGCCCGCGCTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTAGGCCTGACAACATCTGGACGGGTTTTTGCTATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTTCCCTGCTTCGTTGGAGACAAGATTGCTGGGGAATCCATTATAGAAATTGCATGTGGTGCATATCATGTTGCTGTTTTAACATCGAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATCGAAAAACACCAACTTTGGTTGAAGCATTGAAGGATAGACATGTGAAGTATATAGCATGTGGATCAAACTACTCTGCTGCTATATGCCTTCATAAATGGGTATCTGGTGCTGACCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCAGTGTTGGCTCCTAATCCTGGCAAGCCATATCGGGTGTGTGATTCTTGTTATGCAAAATTGAACAAAGTTGCAGAAGCTAGCAATAATAATAGGAAGAATGCCTTGCCTCGTCTGTCAGGTGAAAATAAGGATAGGTTAGACAAGTCTGACCTAAGATTGTCCAAGTCAGTAATTCCTTCTAACATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGAAAGAAGGCTGATACTTTTTCACTGGTTCGGACCTCACAAGCACCATCTTTGCTCCAGCTAAAAGATGTTGTCCTGTCCACTGCTATTGATCTGAGACGAACAGTTCCAAGACCTGTAGTTGTGCCATCAGGAGTAAGTTCCAGATCTGTGTCCCCTTTTTCTAGACGACCAAGCCCCCCTCGTTCGGCTACACCTATCCCAACAACATTGGGACTTTCCTTCTCCCAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAAGAAGTGCAGAAGTTACGTGCTCAGGTTGAGAGCCTGAGACAGAGATGTGAAATGCAAGAATTAGAGCTTCAAAAGTCAGCCAAAAAGACTCAAGAAGCTATGGCGCTGGCTGCTGATGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTGACAGCAAAGCTCAAAGAACTGGCCGAGAAACATCCTCCTGGAGTTAATGATGCTGAGAATATTAGATCAGCTTACCTACCAAATGGTCTTGAGCAAAATGGCATTCACTATTCAGATTCAAATGGGGAGCAGCACTCCGTGATAGAATCATTCAATGGCTCTAGTTTGGCATCCATGGGACTTGAATCCTCTATGTTGAATAGAACCATGGAGAATTCACCAGGAACTCATGGAACCAATCTTCACCACCAATTCAGGACATCTAACGGGACCAATAATTATCCAGATGTTAAATTGCCAAATGGTGGTGGTGTGATTCAGGCTAGCAGTAATAGCATGACAGATACTGTTGATGGAAGGGATTCGGGGCATTTTCATGATGACGAGAGTGGTTTGAAATCGAGGAATGCCGCACCTGCTGCTAATAGTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTTGTGGCCCTGCGCGATGGAACAAGAGAGCTGAAGCGAGTGCGCTTCAGCCGGAGGAGATTTGGAGAGCACCAAGCCGAAATTTGGTGGTCAGAGAATCGGGACAAGGTATATGAAAGATACAATGTTCGAAGCACTGACAAGCCTCCAAGCCAAGCAGCGCGTAGTACAGAGGGTGCTGGTTCACCTGTTTCCCAAACTTAA 3351 0.4363 MADLASYGNANRDVEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWITSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLILDDSRDLTSNSPSESSASASRDISSPEISARLPNTSPKSFQRDNKISESSHAPPDPTNMQVKESGSDAFRVSVSSAHSTSSHGSGPDDYDALGDVYIWGEVICENVKVGADKYVNYLSPRADVLLPRPLESNVVLDVHHIACGVKHASLVTRQGEVFTWGEESGGRLGHGVGKDVVQPHLVEALTSTAIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTMAVACGVWHTAAIVEVIATQSSTSASSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFAMGSTVYGQLGNPQSDGKLPCFVGDKIAGESIIEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGADQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAVLAPNPGKPYRVCDSCYAKLNKVAEASNNNRKNALPRLSGENKDRLDKSDLRLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLSTAIDLRRTVPRPVVVPSGVSSRSVSPFSRRPSPPRSATPIPTTLGLSFSQSIADSLKKTNELLNQEVQKLRAQVESLRQRCEMQELELQKSAKKTQEAMALAADESAKCKAAKEVIKSLTAKLKELAEKHPPGVNDAENIRSAYLPNGLEQNGIHYSDSNGEQHSVIESFNGSSLASMGLESSMLNRTMENSPGTHGTNLHHQFRTSNGTNNYPDVKLPNGGGVIQASSNSMTDTVDGRDSGHFHDDESGLKSRNAAPAANSNQIEAEWIEQYEPGVYITLVALRDGTRELKRVRFSRRRFGEHQAEIWWSENRDKVYERYNVRSTDKPPSQAARSTEGAGSPVSQT* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1262 1116 Coils Coil 878 898 - -
Apr6g1262 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Apr6g1262 1116 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Apr6g1262 1116 Coils Coil 822 863 - -
Apr6g1262 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Apr6g1262 1116 SMART fyve_4 620 689 IPR000306 GO:0046872
Apr6g1262 1116 SUPERFAMILY FYVE/PHD zinc finger 622 696 IPR011011 -
Apr6g1262 1116 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Apr6g1262 1116 SUPERFAMILY RCC1/BLIP-II 234 623 IPR009091 -
Apr6g1262 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Apr6g1262 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 465 512 IPR000408 -
Apr6g1262 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Apr6g1262 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 517 566 IPR000408 -
Apr6g1262 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 403 451 IPR000408 -
Apr6g1262 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 348 399 IPR000408 -
Apr6g1262 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 295 IPR000408 -
Apr6g1262 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 1092 1116 - -
Apr6g1262 1116 Gene3D - 12 129 IPR011993 -
Apr6g1262 1116 CDD PH_PLC_plant-like 12 124 - -
Apr6g1262 1116 Gene3D - 180 452 IPR009091 -
Apr6g1262 1116 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 146 185 - -
Apr6g1262 1116 CDD FYVE_like_SF 631 684 - -
Apr6g1262 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 145 228 - -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 192 227 - -
Apr6g1262 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 701 IPR013083 -
Apr6g1262 1116 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Apr6g1262 1116 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Apr6g1262 1116 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Apr6g1262 1116 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Apr6g1262 1116 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Apr6g1262 1116 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Apr6g1262 1116 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 1007 1021 - -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 785 812 - -
Apr6g1262 1116 SUPERFAMILY PH domain-like 13 123 - -
Apr6g1262 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Apr6g1262 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1097 - -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 959 1029 - -
Apr6g1262 1116 Pfam FYVE zinc finger 622 688 IPR000306 GO:0046872
Apr6g1262 1116 MobiDBLite consensus disorder prediction 992 1006 - -
Apr6g1262 1116 Gene3D - 453 620 IPR009091 -
Apr6g1262 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1097 - -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 1094 1116 - -
Apr6g1262 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Apr6g1262 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Apr6g1262 1116 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Apr6g1262 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Apr6g1262 1116 MobiDBLite consensus disorder prediction 959 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1262 Apr-Chr6 17353828 17363833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1262 1037 1097 Major Intrinsic Protein MIP AT1G31880 50.820 1.05e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1262 - - gmx:100805364 1929.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1262 6 17353828 17363833 Apr8g2128 8 31876053 31883979 PCT