Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1245 ATGTTGGAAGGTGGTGCAAAATTCCCTGGAATAATAGACCTCAACAAACACAATGATAACTATTATGATTTCTCTCAAGGCTTTTATCATAAGCTTGAGGAGGGCACCAATATGTCAATTGACAGCATTGGGCAGACAAGTAATGGTGGAGGATCTGTTGCAATGTCTATGGACAATAGCAGTGTTGCGTCCATTGATTCCCATACTCGTATATTGAACCACCAAGGGTTGCGGAGACATGCCACTGATAACTACTCCATTGCACACAGCGTCAATCATCGAGGGAGAGTCACACATGCTTTGAGTGATGATGCTTTGGCTCAAGCTTTATTGGACAGTAGTTCCCCAACTGAGGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGAAATCTTAGTATGGGTGAGGCTTTTGCTCAAGGAGCTTTCGGGAAACTCTACAGAGGTACTTACAATAGTGAAGATGTTGCTATCAAAATCTTGGAGAGGCCTGAAAATGATCCAGCAAAGGCTCAGTTGATGGAACAACAGTTTCAGCAGGAGGTGATGATGCTGGCTACACTAAACCATCCTAACATAGTTCGTTTTATTGGTGCATGTCGTAAGCCAATGGTTTGGTGCATTGTTACAGAATATGCCAAAGGGGGTTCAGTTCGACAGTTTTTGATAAAGCGTCAAAACCGATCAATGCCCCTCAAATTGGCTGTCAAACAGGCTTTGGATGTTGCACGGGGAATGGCATATGTTCATGGCCTTGGGTTGATCCATAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAATCAATTAAAATTGCTGATTTTGGAGTTGCCCGGATTGAGGTGCTAACTGAAGGAATGACACCTGAGACTGGGACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAGGTAGATGTATATAGTTTTGGGATTGTTCTATGGGAGCTCATCACTGGAATGCTTCCATTTCAGAACATGGCAGCAGTACAAGCAGCGTTTGCAGTTGTGAACAAAAATGTTCGCCCAATCATTCCCAATGACTGCTTACCTGTTCTCCGTGAGATCATGACAAGATGCTGGGATAACAATCCTGATGTTAGGCCACCATTTACTGAAGTTGTAGGAATGCTTGAAAACGCAGAGATTGAGATCATGACAACTGTTCGGAAGGCCCGTTTTAGGTGTTGCATGACACAACCAATGACCACTGACTGA 1245 0.4345 MLEGGAKFPGIIDLNKHNDNYYDFSQGFYHKLEEGTNMSIDSIGQTSNGGGSVAMSMDNSSVASIDSHTRILNHQGLRRHATDNYSIAHSVNHRGRVTHALSDDALAQALLDSSSPTEGLDNFDEWTIDLRNLSMGEAFAQGAFGKLYRGTYNSEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLNHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLIKRQNRSMPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVLTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMAAVQAAFAVVNKNVRPIIPNDCLPVLREIMTRCWDNNPDVRPPFTEVVGMLENAEIEIMTTVRKARFRCCMTQPMTTD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1245 414 PRINTS Tyrosine kinase catalytic domain signature 211 224 IPR001245 GO:0004672|GO:0006468
Apr6g1245 414 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672|GO:0006468
Apr6g1245 414 PRINTS Tyrosine kinase catalytic domain signature 295 305 IPR001245 GO:0004672|GO:0006468
Apr6g1245 414 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672|GO:0006468
Apr6g1245 414 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672|GO:0006468
Apr6g1245 414 SMART serkin_6 133 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1245 414 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 405 - -
Apr6g1245 414 CDD STKc_MAP3K-like 140 387 - -
Apr6g1245 414 SUPERFAMILY Protein kinase-like (PK-like) 117 387 IPR011009 -
Apr6g1245 414 PANTHER SERINE-THREONINE PROTEIN KINASE 2 405 - -
Apr6g1245 414 Pfam Protein tyrosine and serine/threonine kinase 134 386 IPR001245 GO:0004672|GO:0006468
Apr6g1245 414 Gene3D Phosphorylase Kinase; domain 1 122 215 - -
Apr6g1245 414 Gene3D Transferase(Phosphotransferase) domain 1 216 410 - -
Apr6g1245 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Apr6g1245 414 ProSiteProfiles Protein kinase domain profile. 133 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1245 Apr-Chr6 16904416 16907831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1245 24 414 MAP Kinase Kinase Kinase AT2G24360 78.005 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Apr6g1245 PK_Tyr_Ser-Thr 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1245 - - gmx:100788536 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1313 2 19293150 19299479 Apr6g1245 6 16904416 16907831 PCT