Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1238 ATGGCACTCATCACTCCTTTAACTTTAATGCCACCATTCCCATTCTTAATATTATTATTTGTAGTTGCATTCTCCACCATCCTCTCATCACATGTCGTTTCAAGTGATTCAGAAACAGATTTGCTCCTCAAATTCAAGAACTCCCTTCAATTGCAAAATGACAATAAATTATCTTCATGGAATGCATCAACCCCTCCATGTTCAGGTGATGATGCCAAATGGCCTGGCGTTTTGTGCTATAACGGACACGTGTGGGGGCTGAAGCTTGAGAATATGAAGCTCAAGGGGAACATTGATGTTGACTCCCTCAAGGAGTTATCGTATTTCAGGACCTTAAGCTTGATGAACAATGATTTCGACAGCACATGGCCTGAGCTTAACAATCTATTGGGTTTGAAGAACATTTACCTTTCAAATAACAAGTTTTCCGGGGAGGTTCCTGCTCAAGCATTTCAAAATATGCAATGGTTGAAGAAAATTTTCTTGTCAAACAACCAATTCACAGGTACCATTCCATTTTCCCTTGTATCATTGCCTAGGCTCATGGAGTTGAGATTAGATGGAAACAAATTCACAGGCTCCATTCCCAACTTCAGCCAAAAATTTAAATCATTTAACGTAGCTAACAATGAATTAGAGGGAGAAATACCAGCCAGCCTCAGCAACTTACCAGCTTCATCTTTTTCTGGTAATGAAAGGCTATGTGGAGCTCCATTAAATACATGCCCCTCCAACCAAAAGTCATCAATTGTGAGTATTATTGTGGTTGTGGTTCTTGTTATTGTGGCACTCATTGTGATTGGAGCAGTAATATTAATGGTCCTTCGTAGAAGAAGGAAACAACTACCAACAGTGTCAAGGGAAAATCAAGAGTCCAGCAGGCACAGCCATCAAAAGAAATCAGGAAGTAGGGAAGCTTCGGATGAAGGAAGTCACAGGTCTACAAGGTCCCAAGGTTCAACCCACAGCAGCAGAAGAGGAGACAATATGAGATTGTCATTTGTGAGGGATGACAGAGAACAGTTTGATTTGCATGAACTGTTGAGAGCCTCTGCTGAGATATTGGGCAGTGGTTGTTTCAGTTCTTCCTACAAGGCTGCTCTTTTGAGTGGCCCCGTTATGGTTGTCAAGAGATTCAAGCAAATGAATAATGTTGGAAGAGAAGAGTTTCAAGAGCACATGCGACGTATTGGAAGATTGAATCATCCTAATCTGCTTCCTCTCGTCGCTTACTACTACAGAAGGGAAGAGAAGCTTTTGGTTACCGACTTTGTTCACAATGGAAGCTTGGCTGTTCGCCTTCACGGATACCAAGGTCTAGGGCAACCAAGTCTTGATTGGGCAACCAGGTTGAAGATTGTGAAAGGCATAGCAAAGGGTCTAGAATATTTGTACAAGGAGATGCCAAGCCTAATAGCGCCCCACGGACATCTTAAATCCTCCAACGTTCTTCTGGGTGAATCTTTTGAGCCAACCCTCACTGATTATGGGTTGGTACCAGTGATAAACCAAGAACTTGCTCCTGATATAATGGTGATCTATAGGTCCCCAGAATATTTGCAATATGGCCGTGTTACAAAGAAGACTGATGTGTGGAGTCTTGGGATACTCCTTGTGGAGATTCTTACTGGCCACTTACCAGCTAACTTTCTACAACAAGGCAAAGGAAGCGATCAGTTGAGTTTGGCAAATTGGGTAAATTCGGTTGTCCCTGAAGAGTGGAGTAGTGAGGTGTTTGATAAAGATATGGAGGTAACAAGAAACAGTGAGGGGGAGATGGTGAAGCTTTTGAAGATTGCATTGGCATGTTGCGAAGTGGACGTAGAAAAGAGGTTGGATTTAAAAGAAGCTGTAGACAGAATTCAAGAGATAAAGGAAACAGATAACGAAGAGGATTTAGACTCTTCTAATAATGCTGATGTTAAGTCTTCTTCATAG 1938 0.419 MALITPLTLMPPFPFLILLFVVAFSTILSSHVVSSDSETDLLLKFKNSLQLQNDNKLSSWNASTPPCSGDDAKWPGVLCYNGHVWGLKLENMKLKGNIDVDSLKELSYFRTLSLMNNDFDSTWPELNNLLGLKNIYLSNNKFSGEVPAQAFQNMQWLKKIFLSNNQFTGTIPFSLVSLPRLMELRLDGNKFTGSIPNFSQKFKSFNVANNELEGEIPASLSNLPASSFSGNERLCGAPLNTCPSNQKSSIVSIIVVVVLVIVALIVIGAVILMVLRRRRKQLPTVSRENQESSRHSHQKKSGSREASDEGSHRSTRSQGSTHSSRRGDNMRLSFVRDDREQFDLHELLRASAEILGSGCFSSSYKAALLSGPVMVVKRFKQMNNVGREEFQEHMRRIGRLNHPNLLPLVAYYYRREEKLLVTDFVHNGSLAVRLHGYQGLGQPSLDWATRLKIVKGIAKGLEYLYKEMPSLIAPHGHLKSSNVLLGESFEPTLTDYGLVPVINQELAPDIMVIYRSPEYLQYGRVTKKTDVWSLGILLVEILTGHLPANFLQQGKGSDQLSLANWVNSVVPEEWSSEVFDKDMEVTRNSEGEMVKLLKIALACCEVDVEKRLDLKEAVDRIQEIKETDNEEDLDSSNNADVKSSS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1238 645 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Apr6g1238 645 Gene3D Phosphorylase Kinase; domain 1 339 424 - -
Apr6g1238 645 MobiDBLite consensus disorder prediction 282 330 - -
Apr6g1238 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 635 - -
Apr6g1238 645 MobiDBLite consensus disorder prediction 282 312 - -
Apr6g1238 645 Gene3D - 220 338 - -
Apr6g1238 645 SUPERFAMILY Protein kinase-like (PK-like) 353 625 IPR011009 -
Apr6g1238 645 SUPERFAMILY L domain-like 36 238 - -
Apr6g1238 645 Pfam Leucine rich repeat N-terminal domain 36 79 IPR013210 -
Apr6g1238 645 Gene3D Transferase(Phosphotransferase) domain 1 425 644 - -
Apr6g1238 645 Gene3D Ribonuclease Inhibitor 34 219 IPR032675 -
Apr6g1238 645 MobiDBLite consensus disorder prediction 313 328 - -
Apr6g1238 645 ProSiteProfiles Protein kinase domain profile. 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1238 645 PANTHER LRR RECEPTOR-LIKE KINASE 16 635 - -
Apr6g1238 645 Pfam Protein kinase domain 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1238 Apr-Chr6 16834364 16836421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1238 9 632 Receptor kinase-like Gene Family AT5G35390 51.708 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr6g1238 Pkinase 6.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1238 - - ccaj:109803310 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1320 2 19385214 19388306 Apr6g1238 6 16834364 16836421 PCT