Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1235 ATGAAGACGCAGCCTCAGCCTCAGCCTGACGGTGCCTCCGCCGCACCCAACCCCTGCGAAGAGAAGAAGAGCATAAATCCAGAGCTGTGGCAGGCTTGTGCGGGACCCCTCGTTAATCTTCCACCCGCTGGCACTCACGTCATCTACTTCCCTCAGGGCCACAGCGAACAGGTTGCTGCATCCTTGAAGAAGGATGTCGACGCTCAAGCCCCCAACTATCCCAATCTTCCTTCTAAGCTGCTCTGTCTCCTTCACAATCTCACTTTGCATGCTGATCCCGAAACAGATGAAGTTTATGCTCAGATGACCCTTCAACCAGTGCCTTCTTTTGACAAGGATGCCTTATTAAGATCAGATCTCGCTCTCAAGTCAACCAAGCCACAACCCGACTTTTTCTGCAAGCAACTCACTGCAAGCGATACAAGTACTCATGGAGGTTTCTCTGTACCTCGTCGTGCAGCAGAGAAGATTTTCCCCCCTCTCGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTTGCGAGGGATTTGCACGATACTGTTTGGACTTTCCGCCACATATATCGTGGACAACCGAAACGGCACTTGCTTACAACTGGCTGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTTGCTGGAGACTCTGTTTTATTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCGTCATCAGTGCTATCAAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCTGCTCATGCTGCTGCAAACAATAGTCCCTTTACCGTGTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTTTACAGCCACCAACCATCTCTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGTACAATCACGGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAATTCTCAATGGCGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGGAGCAGGGTCTCAATCTGGGAAATTGAGCCAGTGACTGCTCCATTTTTCATTTGTCCACCTCCATTTTTTCGATCCAAGAGGCCAAGACAACCCGGAATGCCTGATGATGAATTATCTGATTTTGATAGCCTTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGTCTGAGCTTAGCTCAGTGGATGAACATGCAACAAAATCCTGCGCTGGCTAGCTCATTGCAGCCAAATTATGTACCTTCCTTAACGGGATCTGTTTTGCAAAATCTTCCTGGTGCAGACATTTCCCGTCAGCTGGGATTTTCCAGTCCTCAAATTTCTCAGTCAAACAATGTGGCCTTCAATGCTCAGAGGCTACTTCAGACTGCACAACAACTTGATCACCTTCAGAAGCTACCATCCACGTCTAGCACATTGGGAACAGCCCTGCCACCACAGCAACAGTTGGGTGATATCACTCAACAACCAAGGCAGAACATGGCAAATCAAACTCTTCCGCAGAGTCAAGTTCAGGCCCAGCTCTTGCATCCCCAGAATCTTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAGCTCCATAGAAGCCTCTCTCAGAATCCACCACAGCAGCAGCAACAGCAGCAGACAATTATAAGTCAGAATCAACAACAAAATTTGATTCAGTCCCCCATGCCTGATCATGTTCAACAATTACAGATGTCTGATAGTCAGATTCCATTGCAGTTTTTACACAAGCTTCAACAACAAAAACAAACACTCTTGGCACAGCAATCTGCATTCCAGCAGCCTACTCAACTTACTCAAATCCAGGATCAGCAGAGGCAGCTTTTAGATAAAACACATAACTTATCTAGAGCTCAAGCACCTGGTCAAATGCTGGAAATTCCTCCTATACTTCAAAATTCACTACCTGAGGCTAATTCTATCACACATCAGATGGCAAAGGCTAATGGCCGGAACAATATTCAATTATGTCATCTGCCTCAGCAGCCCAAGCTTCAACAGCAGCAACCTGGCTTGCTCTCTGAAATGGCTGGCCACATGGCACTTCCTCCTACCCCTACAACCAACCAACTTTCTGCTGCTGGTAGTAGTATACTGACGGGAGCTGCTGGTGCAGGGCAATCTGTAATTACTGATGATGTTCCATCTTGCTCCACTTCACCTTCTACAAATAACTGTGCCAATGCACTTCCTTCATTGATAAATTCCCGATTCCAGAGACGTACAACAGTAGGGGATGACATGGCTCAGTCCACTGCCACAATCTTGAGTTCAGGTGCCTTAGAAACCATGCCATCCAGTGCAAACTTGTTGAAAGATTTACAGCCGAAGTCTGAAGTTAAGCCTTCTCTGAATATTTCCAAAAATCAGAATCAAGGGCATTTTGGTCCTCAGATGTACTTGAATGGTAGCACTGCTCAGACAGATTATTTGGATACATCATCTTCTACAACATCAGTTTGCATATCTCAGAGTGATGCTCATATGCATCAGAATAACAACCCATTATCTTACAATCCACAGTCTATGTTGTTTAGAGACAATAGTCAAGATGGGGATGTTCAGGCAGATGCACGGAGCAATATTCCATATGGTAATAACATTGATAACCAAATGGGAATACCACTGAATCCAGATTCTCTTTTAACCAAAGGCACGTTGGGGCTGGGGAAGGATTTGTCTAATAATTTTTCTTCGGATGGTATGCTTGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCGTCTTCGATGGTCTCACAAACATTTGGAGTCCCTGATATGACCTTCAATTCAATTGACTCCACAATAGATGATAGTAGCTTCTTGAATAGGGGTCCATGGGCTCCACCACCAGCGCCGCCACCACCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACATATACCAAGGTATATAAGCGTGGAGCTGTGGGAAGGTCCATAGACATAACACGGTATTCAGGTTATGAGGAGCTTAAACAGGATCTTGCTCGTAGGTTTGGCATAGAGGGGCAGATGGAGGATCGGCAAAGAATAGGTTGGAAACTTGTCTATGTAGATCATGAGAATGATGTTCTACTAGTGGGAGATGACCCTTGGGAGGATTTTGTGAACTGTGTCCGCTGTATTAAAATCCTTTCTCCTCAAGAGGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACTTAA 3363 0.4552 MKTQPQPQPDGASAAPNPCEEKKSINPELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASLKKDVDAQAPNYPNLPSKLLCLLHNLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDELSDFDSLFKRTMPWLGDDMCMKDPQGLPGLSLAQWMNMQQNPALASSLQPNYVPSLTGSVLQNLPGADISRQLGFSSPQISQSNNVAFNAQRLLQTAQQLDHLQKLPSTSSTLGTALPPQQQLGDITQQPRQNMANQTLPQSQVQAQLLHPQNLVQTNNILQQQQPSIQNHQLHRSLSQNPPQQQQQQQTIISQNQQQNLIQSPMPDHVQQLQMSDSQIPLQFLHKLQQQKQTLLAQQSAFQQPTQLTQIQDQQRQLLDKTHNLSRAQAPGQMLEIPPILQNSLPEANSITHQMAKANGRNNIQLCHLPQQPKLQQQQPGLLSEMAGHMALPPTPTTNQLSAAGSSILTGAAGAGQSVITDDVPSCSTSPSTNNCANALPSLINSRFQRRTTVGDDMAQSTATILSSGALETMPSSANLLKDLQPKSEVKPSLNISKNQNQGHFGPQMYLNGSTAQTDYLDTSSSTTSVCISQSDAHMHQNNNPLSYNPQSMLFRDNSQDGDVQADARSNIPYGNNIDNQMGIPLNPDSLLTKGTLGLGKDLSNNFSSDGMLGNYENNRDAQQELSSSMVSQTFGVPDMTFNSIDSTIDDSSFLNRGPWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQMEDRQRIGWKLVYVDHENDVLLVGDDPWEDFVNCVRCIKILSPQEVQQMSLDGDFGNGLPNQACSSSDGGNT* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1235 1120 MobiDBLite consensus disorder prediction 555 586 - -
Apr6g1235 1120 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Apr6g1235 1120 ProSiteProfiles PB1 domain profile. 1009 1093 IPR000270 GO:0005515
Apr6g1235 1120 SMART B3_2 132 234 IPR003340 GO:0003677
Apr6g1235 1120 Pfam AUX/IAA family 1008 1094 IPR033389 -
Apr6g1235 1120 SUPERFAMILY CAD & PB1 domains 1022 1087 - -
Apr6g1235 1120 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr6g1235 1120 Gene3D - 1004 1098 - -
Apr6g1235 1120 PANTHER AUXIN RESPONSE FACTOR 9 1113 - -
Apr6g1235 1120 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Apr6g1235 1120 MobiDBLite consensus disorder prediction 1 21 - -
Apr6g1235 1120 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 1113 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr6g1235 1120 SUPERFAMILY DNA-binding pseudobarrel domain 122 261 IPR015300 -
Apr6g1235 1120 CDD B3_DNA 131 223 IPR003340 GO:0003677
Apr6g1235 1120 Gene3D - 296 367 - -
Apr6g1235 1120 Gene3D - 130 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1235 Apr-Chr6 16815273 16822268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1235 21 475 B3 DNA Binding Superfamily AT1G19220 73.799 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr6g1235 B3 3.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1235 - - ccaj:109803454 1936.77