Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1232 ATGGGTGGAGGAATGGAAGCGAACAAGAACAAGTTCATCGAGGATTGGGGCACTGCCAGAGAGAATCTCGAGTTCAATTTCCGATGGACTCGCCGCAACCTCGCACTTGTTGGTATCTTCGGTATCGCCATTCCTGTCCTCGTCTACAAGGGCATCGTCAGAGAATTCATGGCTGATGGCGATGAGGCCGATAAGAACATTGGGATGTGGAAAATCAAGACATTGATCAAATCTCTTGAGGCTGCCAGAGGAAATGGGACCAGCATGATTTCCCTTATAATGCCCCCACGTGATCAAATATCTCGTGTTAACAAGATGCTCGGGGATGAGTTTGGAACTGCATCAAACATCAAAAGCAGGGTGAATCGACAGTCCGTGCTTGGTGCAATCACTTCTGCTCAGCAGCGGCTCAAGCTTTACAACAAGGTTCCTCCCAACGGGCTTGTTTTGTACACTGGCACAATCGTCACTGCAGATGGGAAGGAAAAGAAGGTGACTTTTGATTTTGAGCCTTACAGACCTATCAATGCGTCTCTTTATCTCTGTGACAATAAGTTCCACACTGAAGCATTGAATGAGCTCCTGGAGTCTGATGACAAGTTTGGATTCATTATCATGGATGGCAATGGTACTCTTTTTGGGACCTTGAGTGGTAATACAAGAGAGGTTCTTCATAAATTTACTGTTGATCTCCCAAAGAAACACGGGAGAGGAGGCCAATCAGCTCTACGGTTTGCCCGTCTTCGTATGGAGAAACGTCATAACTATGTGAGAAAGACCGCAGAGCTTGCTACCCAGTTTTATATCAATCCTTCTACCAGCCAACCCAATGTTGCTGGCTTAATACTCGCTGGTTCTGCTGATTTCAAAACTCAGCTTAGTCAGTCAGACATGTTTGATCCTCGGCTTCAGGCAAAAGTGCTTAATGTTGTTGATGTTTCCTATGGAGGGGAAGACGGCTTTAATCAGGCTATCAAACTCTGTGCCGAAATTCTGTCCAATGTGAAGCTTATCCAGGAGCAACGATTGATTGGAAAATACTTTGAGGAGATCAGCCAGGATACCGGAAAGTATGCTTTTGGGGTTGATGATACACTAAAAGCTCTGGAGATGGGGGCTGTTGAGACGCTTATTGTATGGGAAAATCTTGATATGAATAGGTATGTGTTGAAAAATAGTGTTACTGGTGAGATTGTTATTAAGCATCTTAAAAAGGAACAGGAGGCCAACCAAGACAACTTTCGGGATCCTGCAACCTCTGCTGCTTATGAGGTTCAAGAAAAGATGTCTCTGCTGGAGTGGTTTGCAAACGAATACAAACGGTTTGGCTGCACTCTTGAGTTCATCACCGACAGATCACAAGAAGGTTCACAGTTTTGCAAAGGTTTTGACGGGATAGGCGGGATCCTGCGCTACCAGCTTGACATGCGATCATTTGATGAATTCTCTGATGATGAAGAGGTAAATGATGATTCTGAATAG 1482 0.4487 MGGGMEANKNKFIEDWGTARENLEFNFRWTRRNLALVGIFGIAIPVLVYKGIVREFMADGDEADKNIGMWKIKTLIKSLEAARGNGTSMISLIMPPRDQISRVNKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTADGKEKKVTFDFEPYRPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPSTSQPNVAGLILAGSADFKTQLSQSDMFDPRLQAKVLNVVDVSYGGEDGFNQAIKLCAEILSNVKLIQEQRLIGKYFEEISQDTGKYAFGVDDTLKALEMGAVETLIVWENLDMNRYVLKNSVTGEIVIKHLKKEQEANQDNFRDPATSAAYEVQEKMSLLEWFANEYKRFGCTLEFITDRSQEGSQFCKGFDGIGGILRYQLDMRSFDEFSDDEEVNDDSE* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1232 493 Gene3D - 335 492 IPR029064 -
Apr6g1232 493 Pfam eRF1 domain 2 200 333 IPR005141 -
Apr6g1232 493 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 69 473 IPR004403 GO:0003747|GO:0006415
Apr6g1232 493 Pfam eRF1 domain 3 337 474 IPR005142 -
Apr6g1232 493 Gene3D eRF1 domain 1 54 191 IPR024049 -
Apr6g1232 493 SUPERFAMILY L30e-like 334 476 IPR029064 -
Apr6g1232 493 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 57 493 - -
Apr6g1232 493 SMART eRF1_1_2 60 196 IPR005140 -
Apr6g1232 493 Pfam eRF1 domain 1 81 194 IPR005140 -
Apr6g1232 493 Gene3D eRF1 domain 2 192 333 IPR042226 -
Apr6g1232 493 SUPERFAMILY Translational machinery components 198 332 - -
Apr6g1232 493 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 63 196 IPR024049 -
Apr6g1232 493 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 57 493 IPR004403 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1232 Apr-Chr6 16792108 16798024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1232 57 493 Eukaryotic Initiation Factors Gene Family AT3G26618 85.812 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1232 K03265 - gmx:100785916 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1232 6 16792108 16798024 Apr6g1232 6 16792108 16798024 ECH