Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1219 ATGGGAAGGAAGTGCTCACATTGTGGAAACATCGGCCATAATTCAAGGACTTGTGCATCTTTCAGAGGGTCTTTTGTAGGAGTTCGCCTCTTTGGCGTTCAACTTGACATCTCCTCTTCTTCTCTTTCCTTGAAGAAAAGCTTTAGCATGGATTCCTTGCCCTCATCATCGTCCCCTTCTTCCTCCTTTTCTTCCTCAAGAATATCCATTGATGAACATTCTGACAAAGCCTCTATTGGGTATCTATCAGATTCAGATGGTCTCATAGTTCGAGCACAAGAGAGGAAGAAAGGAGTACCATGGACAGAAGAAGAGCACCGAACTTTCCTTGTTGGTCTTGAGAAGCTGGGAAAAGGTGATTGGAGGGGTATCTCTAGAAACTATGTGACTACAAGAACCCCAACCCAAGTTGCTAGCCATGCTCAGAAGTACTTTATTCGACTGGCAAGCATGAATAAGAAGAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGTGGAGACAGCACAAATCCAATTAGCAGGAGCTCTAACTGCAAGTCAGGTGATTCAGTTCAAACAAAATCTAAATGTGAAGTTGAGAACGATGCTACCTTGTCATTGCTTCGGCAAGAGACCAAATCAGATGAGCAGAAAAGTACAGATAATTACTCTCAAGCTGAAGAACATGAAGCGGTACCCATGTGGGTTCATTCCCAGATTAAATCTTCAAATAATGCAGCAACGCCTGATTTGGAACTCACTCTTGCAGTTCCCAAGGAACAAAATAAATCATCTCCGGGTTCCTTCCTTCTTGGTCCAATTAGCGTTACTTAA 813 0.4293 MGRKCSHCGNIGHNSRTCASFRGSFVGVRLFGVQLDISSSSLSLKKSFSMDSLPSSSSPSSSFSSSRISIDEHSDKASIGYLSDSDGLIVRAQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLASMNKKKRRSSLFDLVGGDSTNPISRSSNCKSGDSVQTKSKCEVENDATLSLLRQETKSDEQKSTDNYSQAEEHEAVPMWVHSQIKSSNNAATPDLELTLAVPKEQNKSSPGSFLLGPISVT* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1219 270 PANTHER TRANSCRIPTION FACTOR KUA1 1 268 - -
Apr6g1219 270 CDD SANT 100 145 IPR001005 -
Apr6g1219 270 MobiDBLite consensus disorder prediction 201 224 - -
Apr6g1219 270 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Apr6g1219 270 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 268 - -
Apr6g1219 270 Gene3D - 99 151 - -
Apr6g1219 270 MobiDBLite consensus disorder prediction 202 218 - -
Apr6g1219 270 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Apr6g1219 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Apr6g1219 270 MobiDBLite consensus disorder prediction 251 270 - -
Apr6g1219 270 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 147 IPR006447 GO:0003677
Apr6g1219 270 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Apr6g1219 270 SMART sant 97 147 IPR001005 -
Apr6g1219 270 MobiDBLite consensus disorder prediction 250 270 - -
Apr6g1219 270 SUPERFAMILY Homeodomain-like 94 150 IPR009057 -
Apr6g1219 270 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1219 Apr-Chr6 16721346 16723003 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr6g1219 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1219 - - gmx:778053 338.191