Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1199 ATGGGAAGGGCTCCATGCTGTGACAAATCTAACGTGAAAAGAGGACCATGGTCTCCTGAAGAAGATGCTACCCTCAAAAACTACCTCCAAAAACATGGCACAGGTGGTAATTGGATCTCTCTCCCTCAAAAAGCAGGCCTTAAGCGTTGTGGGAAGAGCTGTCGTCTAAGATGGTTGAACTATCTAAGGCCTCATATCAAGCTTGGAGGGTTCACTGAGGAGGAAGACAAAATTATCTGCACTCTTTATGGCTCCATTGGAAGCAGGTGGTCCCTTATAGCAGCTCAATTGCCTGGGAGAACGGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTTTTGGCAGGAAACACTAGTATTGCCACTGGCAACAATGGCAGTATCAGCAATACTATTAGTTGTACTCATCACTTCTCAACTTTTACTCTTCAACCTCAAGTTGAAGCCTTTGTTTTTGATCAAAAACAAAACTCAGCTTGTTTTGACTCCCACAATGTTTTTGATTCGGAGCAAACATCAATTCCAGTTCCTTTACCAATGCCTATGGAATCAGAAGCTTTTTATAACCAAGGTAGTAGTTGTAGTGCACCACCTACTAGGAAAGTTTCAATGCTTTCCAATGCAACTTCCTCAGTGGAGCAGAAGAAACATACCCAATGGTTTGGGTATGACCATGAAGGTGAAGATGATGTAATTTTGCTTGAATATTATATGCTTAACGATCTGCTTAATCATGGATTTGCATCTCAAGACAAAAACAGCCAAGTTGCTCCGTCATATGGCTAA 798 0.4148 MGRAPCCDKSNVKRGPWSPEEDATLKNYLQKHGTGGNWISLPQKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYGSIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAGNTSIATGNNGSISNTISCTHHFSTFTLQPQVEAFVFDQKQNSACFDSHNVFDSEQTSIPVPLPMPMESEAFYNQGSSCSAPPTRKVSMLSNATSSVEQKKHTQWFGYDHEGEDDVILLEYYMLNDLLNHGFASQDKNSQVAPSYG* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1199 265 CDD SANT 71 113 IPR001005 -
Apr6g1199 265 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr6g1199 265 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr6g1199 265 PANTHER TRANSCRIPTION FACTOR RAX3 1 216 - -
Apr6g1199 265 CDD SANT 16 62 IPR001005 -
Apr6g1199 265 Gene3D - 6 68 - -
Apr6g1199 265 PANTHER OS09G0431300 PROTEIN 1 216 - -
Apr6g1199 265 SMART sant 13 64 IPR001005 -
Apr6g1199 265 SMART sant 67 115 IPR001005 -
Apr6g1199 265 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr6g1199 265 Gene3D - 70 135 - -
Apr6g1199 265 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Apr6g1199 265 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr6g1199 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Apr6g1199 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1199 Apr-Chr6 16618477 16619545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1199 1 119 MYB Transcription Factor Family AT5G57620 81.513 3.68e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g1199 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1199 K09422 - gmx:778160 363.614