Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1198 ATGGTTAATCCCAACCGAACCACGGTTAAGTGGCAGTTTATAAGGGAAGCTAACCATGCCGGAGTTTCTGTAAACATCCACATACAACCAAAACCCAACACCAAAATGATGCTCGGAGAGCACCATCGCGCAAATCCAACGGTCCACGTGCCTCCGTGGCCAATCCATGACGATCCAACGGCGGAGATGTATTCTCCGTATGCCGCTAACGACGGCAATGCTGGCGAGTACTCTCCGTACTATTTGCAAGAAGCACTAACGGCGCTGCAGCGTTACTTACCGTCAAACGAGACGGACGCTGACTCCGACTCCGAGGTTCCGGGTCGTGAGTCAGACGCGCCGGTGGACGCGTACTCGTGCGATCATTTCCGCATGTTCGAGTTCAAAGTGAGGAGGTGCGCACGTGGCAGGTCCCATGACTGGACGGAGTGTCCTTACGCTCATCCCGGCGAGAAGGCTCGCCGGCGTGATCCGAGGAAGTTCCACTACTCTGGCACTGCGTGCCCCGATTTCCGCAAGGGGAATTGCAAGAAGGGTGACGCATGCGAGTTTGCGCACGGCGTGTTCGAGTGCTGGCTTCACCCTGCGCGTTACAGGACTCAGCCATGCAAGGACGGGACTAGTTGCCGCAGGCGAGTGTGCTTCTTCGCACACACGCCGGAGCAGCTTCGTCTCATGCCGCAGCAGAGTCCCCGGAGCGCGAACTCGGCGGATTCTTATGATGGGTCTCCGCTGAGGCAGGTTTCGATGCCCTTCATGTCTTCTCCGGCGTCTGTGTCTCCGCCGGAGTCGCCGCCGATGTCGCCGATGACGCAGTCGCTGAGTCGGTCACTGGGCTCAAGTTCGATGAACGAGATGGTGGCTTCTCTGCGGAATTTGCAGCTGGGGAAGTTGAAATCGATCCCCTCAAGCAGGAACGTTCAAATGGGGTCTCCTGGATTCGGGTCACCGAGAGGATCCGTGCTCCGACCCGGGTTTAGTAGTCTTCCAAGTACGCCGACTCAGGCACCGGGTCGTTCTGGGGTAAACTATTTTGAACTTTGGGATCAGAGCTGTGAGGAGGAGCCAGTGATGGAGAGGGTGGAGTCTGGGAGAGACATAAGGGCTAAGATGTTTGAGAAACTGAGCAAAGAGAATTCTTTGGATGGGTCGGGTTCGGGTCGTCAAATGGGTGGGGCTCCGGATTTTGGGTGGGTTTCTGAGCTGGTTAAGTGA 1215 0.5671 MVNPNRTTVKWQFIREANHAGVSVNIHIQPKPNTKMMLGEHHRANPTVHVPPWPIHDDPTAEMYSPYAANDGNAGEYSPYYLQEALTALQRYLPSNETDADSDSEVPGRESDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLMPQQSPRSANSADSYDGSPLRQVSMPFMSSPASVSPPESPPMSPMTQSLSRSLGSSSMNEMVASLRNLQLGKLKSIPSSRNVQMGSPGFGSPRGSVLRPGFSSLPSTPTQAPGRSGVNYFELWDQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDGSGSGRQMGGAPDFGWVSELVK* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1198 404 MobiDBLite consensus disorder prediction 378 404 - -
Apr6g1198 404 MobiDBLite consensus disorder prediction 225 257 - -
Apr6g1198 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 167 187 IPR000571 GO:0046872
Apr6g1198 404 ProSiteProfiles Zinc finger C3H1-type profile. 163 189 IPR000571 GO:0046872
Apr6g1198 404 Gene3D - 163 225 - -
Apr6g1198 404 PANTHER UNKEMPT FAMILY MEMBER 42 404 IPR045234 -
Apr6g1198 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 42 404 - -
Apr6g1198 404 SMART c3hfinal6 197 220 IPR000571 GO:0046872
Apr6g1198 404 SMART c3hfinal6 162 188 IPR000571 GO:0046872
Apr6g1198 404 MobiDBLite consensus disorder prediction 225 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1198 Apr-Chr6 16611233 16614534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1198 112 307 C2H2 Transcription Factor Family AT5G12850 51.675 2.21e-59 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr6g1198 zf-CCCH 4.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1198 - - aprc:113867365 827.009