Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1194 ATGAATAAGATCAGCAACTTGAGCTCTGTGAGTAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAATTTGAAGGGAAGCCGGATTGGCTTGGTTTGCCTGCGGGAGTGAAGTTTGATCCCACAGACCAAGAATTAATAGAACATCTTGAAGCCAAAGTGGAGGCCAAGAACATGAAATCACACCCTTTGATAGATGAGTTTATTCCCACTATTGAAGGAGAAGATGGAATTTGTTATACCCATCCCGAGAAACTTCCAGGAGTAACAAGAGATGGGTTGAGCAGGCACTTCTTCCATAGACCTTCAAAGGCTTATACAACTGGGACAAGAAAGAGAAGAAAGATACAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTAAACGGAAAACAAAAAGGTTGCAAGAAAATTCTAGTCCTTTACACCAACTTTGGAAAGAACAGAAAACCCGAGAAAACCAATTGGGTAATGCATCAATACCATTTGGGTCAGCATGAAGAAGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAACCAAGGCAGTGTAATTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAGCCTAATAATAGCAGAAGAGACAGTGGAAGTGGAAGTTGTTCTTCCAAGGAAATAGTTACTCACAGAGATGAAATGTCTGCTGTTGTTGGTGTCCCTCCAATAACAAGTTTCACTCATCCTTTGGATATGCAACACCTAAAACCCGATCATTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGCTTCAACAGCAAGAGAAGTGCAAGCATCAGGTTCATGTGATGAAGTACATGAAAGGCAGCGACCACAACATGTAACTCATCATCATCATCATCATCATCAACAACAACAACAGCATCCTCATCACCAGATTTCAACCTCAGCTTTTCATATCAGTAGGCCTTCACATCCCATCTCCACCATTATCTCTCCTCCTCCACTCCATCACACATCCATCATTCTCGATGACAACTCTTACCACGTCTCTAGAATAATGCTCCAAAATGAAAATTTCCAGCAACAGCAGCAACAACATCATAAGCTTGGAGGAAGGTCTGCGTCTGGATTGGAGGAACTCATCATGGGGTGCACTTCAACTGAAATCAAAGAGGAGTCATCCATCACAAATCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCTGACCCTGACAACCCGGATCATCATGGGTAA 1332 0.4347 MNKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSRRDSGSGSCSSKEIVTHRDEMSAVVGVPPITSFTHPLDMQHLKPDHFSFIPFRKSFDEASTAREVQASGSCDEVHERQRPQHVTHHHHHHHQQQQQHPHHQISTSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTEIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1194 443 MobiDBLite consensus disorder prediction 302 338 - -
Apr6g1194 443 MobiDBLite consensus disorder prediction 215 247 - -
Apr6g1194 443 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 426 IPR044799 GO:0003700
Apr6g1194 443 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 426 - -
Apr6g1194 443 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Apr6g1194 443 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Apr6g1194 443 MobiDBLite consensus disorder prediction 215 245 - -
Apr6g1194 443 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Apr6g1194 443 MobiDBLite consensus disorder prediction 314 329 - -
Apr6g1194 443 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1194 Apr-Chr6 16562208 16567215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1194 11 440 NAC Transcription Factor Family AT5G56620 54.167 2.81e-138 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr6g1194 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1194 - - gmx:100795246 773.852