Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1193 ATGGAGAAGAGCTGCGTTCTGGCTTTTCTCCTCTTCATTCTCCATTCAAGCACAACAAAAGCTGCCTTTAGTGTAAGTGGTGGTGTTGGTGTAGGTGTAGGGGTTGGTGTTGGTGTTGGTATTGGCAATGGAAATGGTGGTGGTGGCAACAATGGTGGGGTGGTTTGGGTTGGAGGAGGGATTAACAACAACCCAGAACCCTCTGGATCTTCAGTGCCAGGGCTTGATGGAGCTTACACAGCACTGCAGGCTTGGAAATCTGCAATCACTGAGGACCCTCTTAAGATTTTAGATAGTTGGGTTGGTTCTAATGTGTGCTCTTACAAAGGGGTCTTCTGCTCAAATCCTCAAGATGAAGTGGATGCATCTGCTGTCCCAGTTGTTGCAGGGATAGATCTTAACCATGCAAATCTGCAAGGAACTCTTGTCAAAGAGCTCTGTTTACTCAGTGATTTGTCTCTTCTCCACCTCAACAGTAACAGGTTCACTGGCACTATTCCTGATACATTCAGAGACCTTGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCAGCTGTTACATTGTACATGCCAGGCCTCATCTACTTGGACCTCAGATTCAACTCCTTCTCTGGGTCCCTTCCTCAAGAACTTTTCAGTAAGAATCTGGATGCAATATTCCTTAATAACAATCAATTTGAAGGTGAAATTCCTCAGAATTTGGGTAGTTCCCCAGCCTCAGTGATAAACTTAGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTTGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGTTGCATTCCTGAAGGAGTAGGACTCTTCACAGAGATACAGGTTCTGGATGTGAGCTTCAATTCACTCATGGGTCATTTGCCAGACACACTCTCTTGTCTGCAAGATATAGAAGTTCTCAATTTGGCTCATAACAAGCTTTCTGGGGAGTTATCAGATGTAATCTGCTCTTTGAGAAGCCTTGCAAATCTAACTGTTGCTTACAATTTCCTTTCTGGATTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCACTTAACTGCATTCCTGGGAGGGTCATGCAGAGACCTCAACCTGAGTGTTCTGTGATTCCAGGTGGTAGCCTAAGTTGTCTCAGAATCCCCACACCAAAGCCTCTTGTTTGTGGCTCACTGGCTGTAAGTAAGTCTAAGCACATTGATCCCATTCCACCTTCTCCTTAA 1287 0.4452 MEKSCVLAFLLFILHSSTTKAAFSVSGGVGVGVGVGVGVGIGNGNGGGGNNGGVVWVGGGINNNPEPSGSSVPGLDGAYTALQAWKSAITEDPLKILDSWVGSNVCSYKGVFCSNPQDEVDASAVPVVAGIDLNHANLQGTLVKELCLLSDLSLLHLNSNRFTGTIPDTFRDLVFLEELDLSNNQLSGPFPAVTLYMPGLIYLDLRFNSFSGSLPQELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEIQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVICSLRSLANLTVAYNFLSGFSQQCSRLFFRNVGFDFSLNCIPGRVMQRPQPECSVIPGGSLSCLRIPTPKPLVCGSLAVSKSKHIDPIPPSP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1193 428 Pfam Leucine rich repeat N-terminal domain 79 114 IPR013210 -
Apr6g1193 428 Gene3D Ribonuclease Inhibitor 78 243 IPR032675 -
Apr6g1193 428 PANTHER LRR/EXTENSIN 1 428 - -
Apr6g1193 428 Gene3D Ribonuclease Inhibitor 244 367 IPR032675 -
Apr6g1193 428 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 428 - -
Apr6g1193 428 SUPERFAMILY L domain-like 79 362 - -
Apr6g1193 428 Pfam Leucine rich repeat 152 209 IPR001611 GO:0005515
Apr6g1193 428 PRINTS Leucine-rich repeat signature 176 189 - -
Apr6g1193 428 PRINTS Leucine-rich repeat signature 316 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1193 Apr-Chr6 16552553 16554079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1193 73 401 Leucine-rich Repeat extension Gene Families AT3G24480 50.448 3.29e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1193 - - gmx:100775544 702.205