Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1189 ATGAAGACCAAAACGCCATTGAAGCAGCTGAAGCTCGCTGTTCCTGCTCAAGAAACCCCCATTACCTCTTTCTTAACTGCAAGTGGAACATTCCACGATGGAGATCTACTATTGAATCAAAAAGGGTTGCGTCTCATCTCTGAAGAAAAAGAATCTCGGCCCTCAGATGGTAAGGAACTGGAATTTGACTTCTCACTGGATGACCTTGAGACCATCAAAGTAATTGGAAAAGGAAGTGGGGGTGTGGTACAACTTGTTCGCCATAAGTGGGTTGGAAAATTGTTTGCTTTAAAGGTTATTCAGATGAATATACAAGAGGATATTCGAAAACAGATTGTTCAGGAACTGAAAATAAACCAAGCGTCACAGTGTCCACATGTTGTAGTTTGCCATCACTCATTCTATCATAATGGAGTTATATCTCTTGTGTTAGAATACATGGATCGTGGTTCTCTAGCAGATGTAATTAGACAAGTAAAAACAATTCTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTATTGCAAGGTCTTGTTTACTTGCATAATGAAAGACATGTAATACATAGGGACATTAAACCATCCAATCTGTTAGTTAATCACAAAGGCGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCTAGTTCAATGGGGCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGCACTTACGATTATAGCAGTGACATCTGGAGTTTGGGCATGGTAGTACTTGAGTGTGCCATAGGACGGTTTCCTTATATACAGTCTGAAGATCAACAAGGCTGGCCTAGTTTTTATGAGCTTTTGGAAGCCATTGTGGAAAGCCCGCCACCTTCTGCTCCACCTGATCAGTTCTCCCCGGAGTTCTGTTCATTTGTGTCATCCTGCATCCAGAAGGATCCTCACGATCGACTGACATCCTTGGAGCTTCTGGGTCATCCTTTCATTAAAAAGTTTGAAGATAAAGATCTAGATCTTGGGATTTTGGTAGGTAGCTTGGAAGCTCCTGTAAATTTTCCCAGATAA 1065 0.4131 MKTKTPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKELEFDFSLDDLETIKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCHHSFYHNGVISLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQGWPSFYELLEAIVESPPPSAPPDQFSPEFCSFVSSCIQKDPHDRLTSLELLGHPFIKKFEDKDLDLGILVGSLEAPVNFPR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1189 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1189 354 Gene3D Transferase(Phosphotransferase) domain 1 150 344 - -
Apr6g1189 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1189 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Apr6g1189 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Apr6g1189 354 SUPERFAMILY Protein kinase-like (PK-like) 66 337 IPR011009 -
Apr6g1189 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 353 - -
Apr6g1189 354 CDD PKc_MAPKK_plant_like 67 333 - -
Apr6g1189 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1189 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 353 - -
Apr6g1189 354 PIRSF ILK 2 326 - -
Apr6g1189 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1189 Apr-Chr6 16530280 16533111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1189 1 354 MAP Kinase Kinase Gene Family AT5G56580 85.634 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Apr6g1189 Pkinase 2.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1189 K04368 - gmx:100786284 678.707