Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1183 ATGTCAAACTTGCATTACATTTTCATCATGTTAGTTGCTCTTCTTCTTCTGCAAAATCCCAGTAGAATACAGTGCCATACCAAGGGAATTAGACCAGGTCGTTCTGCAGGAAATGCGTTATCAACTAACATGACTAGAGTGCAGTATTCAGAACAGCAATTCATGAAATGGGTAACCTTTGTTGGTAGCCTCAAACACACTGTTTTTAAGGCAGCGAAAAATAAGCTTGTTGCTTCTTACACTTTGCACGTTGATAAGAATCCTTCTGGTGGAGATTTCACTTCAATTCAAGAAGCCATTGATTCCCTACCATTCATCAATCTTGTGAGAGTGGTCATAAAGGTCCATGCAGGGGTTTACACGGAGAAGGTTAACATTCCTGCTTTGAAATCCTTCATAACCATTGAAGGAGCTGGTGCAGATAAAACCATAGTTCAATGGGGTGACACTGCTCAAACACCTGGCCCAAATGGTAGGCCTCTAGGAACCTATGGTTCAGCAACTTTTGCAGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAGTTGGAAAGCAAGCAGTGGCATTAAGGATTTCAGCAGACACAGCAACATTTCTAGGCTGCAAATTCTTAGGAGCACAAGACACACTTTATGATCATGTAGGCAGACATTACTACAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTTGGCAATTCTCTCTCGCTGTTTGAGGAATGTCACGTGCATGCCATAGCACAGAACACAGGAGCTGTAACAGCACAAGGAAGGGGTAGTATGTTGGAGGACACGGGGTTCTCGTTTGTGAACTGTAAGGTCACGGGATCAGGAGCACTATATCTTGGGAGGGCTTGGGGTCCCTTTTCTCGCGTCGTCTTCGCTTACACATATATGGACAACATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCTAATCGTGAAATGACTGTGTTTTATGGACAATACAAATGCTCAGGACTTGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGACGAGGAAGCTAGACCTTTTCTTTCACTTAGCTTTATTGATGGGACTGAATGGATCAAATTGTAG 1143 0.4296 MSNLHYIFIMLVALLLLQNPSRIQCHTKGIRPGRSAGNALSTNMTRVQYSEQQFMKWVTFVGSLKHTVFKAAKNKLVASYTLHVDKNPSGGDFTSIQEAIDSLPFINLVRVVIKVHAGVYTEKVNIPALKSFITIEGAGADKTIVQWGDTAQTPGPNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAVGKQAVALRISADTATFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEECHVHAIAQNTGAVTAQGRGSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCSGLGASFAGRVSWSRELTDEEARPFLSLSFIDGTEWIKL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1183 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 379 - -
Apr6g1183 380 PANTHER PECTINESTERASE 1 379 - -
Apr6g1183 380 Gene3D - 77 380 IPR012334 -
Apr6g1183 380 Pfam Pectinesterase 90 374 IPR000070 GO:0030599|GO:0042545
Apr6g1183 380 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Apr6g1183 380 SUPERFAMILY Pectin lyase-like 77 379 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1183 Apr-Chr6 16479076 16482393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1183 2 378 Carbohydrate Esterase AT5G47500 43.915 8.83e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1183 K01051 - gmx:100793314 719.539