Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1182 ATGGGGAGAGCCACAAGGTGGCTGAAGAGCTTGTTTGGGATAAAGAGAGACAAAGAGCACAAACAAAACTCAAACTTTGGAGACCCAAGAAGCATGAAATGGTCTTCTTCTGAGAATACTAATAATTCGAGAGTTTTGTGTCACAATCCAGCTACTATACCACCCAACATTTCTCCAGAAGAAGCTGCTTGGTTACAATCCTTCTACACAGAAACAGAAAAGGAGCAGAACAAGCATGCCATTGCAGTTGCTGCAGCCACAGCAGCAGCTGCTGATGCTGCTGTGGCAGCTGCACAAGCTGCAGTGGCTGTGGTTAGGCTCACTAGCCATGGAAGAGGCACCATGTTTGGTGTTGGACCTGACATATGGGCTGCTATCAAAATTCAAACAGTGTTTAGAGGATACCTTGCAAGGAAAGCACTAAGAGCCTTAAAAGGATTGGTGAAGTTGCAAGCACTTGTGAGAGGGTATTTAGTAAGGAAGCAAGCAAATGAAACCCTTCATAGTATGCAGGCTCTTGTTAGAGCTCAATCTACAATTAGGTCTCAAAAATCTGGCAGGGTCAAGAGCACAAATAATGAAGCATGTAGATTTCAAAACCGAGCTAGAAGATCCATGGAGAGATTTGATGACACTAGGAGTGAGTATGCAGCTCCAATCCACAATAGAAGGTTATCATCTTCTTTTGACGCCACAATTAACAACAATAACAGTGTTGATGGAAGCCCCAAAATAGTGGAAGTGGACACTGGGAGGCCTAAATCAAGGTCTAGAAGGACCAACACTTCAATATCAGATTTTGGTGATGACCCATCATTTCAAGCACTTTCTTCTCCCTTCCCAATACCATACAAAACCCCTGCACGCTTATCCATACCAGACCACAGGAATTTGCAAGACTCTGAATGGGGGTTAACAGGAGAAGAGTGCAGATTCTCTACAGCTCAAAGCACTCCACGGTTTGCAAATTCTTGCAGCTGTGGATCAGTTGCACCTGTGACACCAAATAGTGTGTGCACTGAAAACTTGTTCCTAAGTCAATATGGGAATTTTCCAAATTATATGGCCAGTACTCAGTCTTTTAAGGCCAAATTGAGGTCTCATAGTGCTCCAAAGCAACGGCCAGAACCTGGTCCAAGAAAGAGGCTTTCCCTCAATGAAATGATGGAGTCAAGGAGTAGTTTGAGTGGGGTTAGAATGCAGAGGTCTTGCTCACAGGTTCAAGAAGTTGTTAACTTCAAGAATGCTGTGATGGGTAAGCTTTACAAGTCCACAGAATCTGCTAAGGAGATAGACAGAAACTATTACTTTCACCGACGGAGGTGA 1326 0.4389 MGRATRWLKSLFGIKRDKEHKQNSNFGDPRSMKWSSSENTNNSRVLCHNPATIPPNISPEEAAWLQSFYTETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGVGPDIWAAIKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQANETLHSMQALVRAQSTIRSQKSGRVKSTNNEACRFQNRARRSMERFDDTRSEYAAPIHNRRLSSSFDATINNNNSVDGSPKIVEVDTGRPKSRSRRTNTSISDFGDDPSFQALSSPFPIPYKTPARLSIPDHRNLQDSEWGLTGEECRFSTAQSTPRFANSCSCGSVAPVTPNSVCTENLFLSQYGNFPNYMASTQSFKAKLRSHSAPKQRPEPGPRKRLSLNEMMESRSSLSGVRMQRSCSQVQEVVNFKNAVMGKLYKSTESAKEIDRNYYFHRRR* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1182 441 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Apr6g1182 441 Pfam IQ calmodulin-binding motif 123 142 IPR000048 GO:0005515
Apr6g1182 441 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 425 - -
Apr6g1182 441 Pfam Protein of unknown function (DUF4005) 318 397 IPR025064 -
Apr6g1182 441 MobiDBLite consensus disorder prediction 27 41 - -
Apr6g1182 441 MobiDBLite consensus disorder prediction 234 270 - -
Apr6g1182 441 ProSiteProfiles IQ motif profile. 124 149 IPR000048 GO:0005515
Apr6g1182 441 MobiDBLite consensus disorder prediction 19 41 - -
Apr6g1182 441 Gene3D - 122 173 - -
Apr6g1182 441 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Apr6g1182 441 SMART iq_5 124 142 IPR000048 GO:0005515
Apr6g1182 441 SMART iq_5 143 164 IPR000048 GO:0005515
Apr6g1182 441 PANTHER IQ-DOMAIN 5-RELATED 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1182 Apr-Chr6 16475279 16476889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1182 1 400 IQD Protein Family AT3G16490 51.716 9.33e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1182 - - gmx:100797909 619.772