Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1179 ATGAAAAAAATTATCACATCATGTGCTAAGATGCCAGTTCTCTCTCTTTTCTCCCTCTTCCTCTTTCTCACCTATGCAAACTCACAGTCTCACTCTCTTCTGTATGATCAAGAACATGCAGTGCTATTGAAGATTAAGCAATACCTGCAAAACCCATCATTTCTCAATCATTGGATTCCATCAAACTCTTCTCATTGTTCTTGGCCAGAGATCTCATGCACCAATGATTCTGTCACTAAACTGGCTATGATCAACACCAACATCACTCAAACACTACCACCTTTCCTATGTGACCTCAAAAACCTCATACACATTGATTTTCAATGGAATTGCATTCCTAGCGAGTTCCCAACATCTCTCTACAACTGCTCCAAGCTTGAGTACCTTGACCTCTCACAGAACTACTTTGTTGGTAAAATTCCTTATGACATTGACCGCTTGGCTAGGCTAAGTTTTCTTAACCTTGGTGGCAACAACTTTTCTGGTGATATTCCAGCCAATATTGGGAGGTTGAAGGAACTAACAAGTCTTCAACTTCATCAGTGTCTTTTCAATGGTACCTTCCTTGCTGATATTGGCAATTTGTCCAACCTTGAAACCTTGTATATGTTCTCAAACAGCATGCTCCCTCCCACAAAGTTGCCATCAAGCTTGACCCAATTGAACAAATTGAAGGTCTTTTATATGTATGGCTCCAACTTGGCAGGGGAAATCCCTGAAGCCATTGGAGAAATGGTGGCATTGGAGCAGTTGGATTTATCAGGAAACGGCTTGAGTGGACAAATTCCCAACGGTTTGTTCATGCTGAAAAATCTGAGCATACTATATCTTTACAATAACAACCTTTCTGGGGAGATACCTGGAATGGTTGAAGCATTCAACTTAACAAGGCTTGATCTTTCACATAATAGTCTTAGTGGGAAAATACCTGATGATTTGGGAAAGCTCAATAAGTTGACATACTTCGGTTTGTCTATGAATCAGTTATCTGGGAAGGTACCAAAAAGCATTGGTCAGTTGCCAGCTCTGACTGATTTTGTTGTTTTTCTCAACAATTTGTCAGGTACTCTACCTCAAGACTTTGGTAGGTTCTCAAATCTTGAAACCTTTCAAGTTGCATCAAATAGTTTCACAGGAAGGCTTCCACAGAACTTGTGCTATTATGGAAGGTTAGTTGGTTTAACTGCATATGACAATTACCTGAGTGGAGAGTTGCCAGAATCTCTAGGAAGTTGCAATAGCTTGCAATATCTGAGAGTTGACAACAATGAGCTTTCTGGCAAAATTCCTAGTGGTTTATGGACATCTATGAATTTGTCAACATTTATGATAAATGATAACAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCCTTGAATCTTTCAGTCCTGGCCATAAGTTACAATCAGTTTTCTGGTAGAATTCCTCGTGGAGTGTCTTCTTGGAAGAATGTTGTGGTGTTCAATGCCAGTAACAACCTCTTCAATGGAAGTATTCCACTAGAGCTAACATCTCTTCCCCAGCTAACAACTCTTCTGCTTGATCATAACCAGCTTACAGGGCCACTTCCATCACATATAATATCATGGAAGTCCTTAATAACTCTAAATTTGAGCCACAATCAACTTTCTGGAGAAATCCCAGATGCAATTTCTCTGTTACACGCTCTCAACATATTGGATTTGTCAGAAAATGAAATCTCTGGCCAAATTCCACTTCAGCTGGCCCTGAAGGGACTCACGAACATCAATCTTTCCTCTAATCACTTGACAGGAAGGATTCCTATTGAATTTGAAAACCTCGTGTATGCCAACAGCTTTTTGAACAATTCTGATCTCTGTGCTGATACCCTGGCACTAAACCTTACCTTGTGCAATTCTAGGCCTCGAAGGGCAAGGAACGGCTCATCTGCATCTCATGCTATGATCACAACCCTGGTTGTAGTATCCTCCTTACTGGCTTTCTTGTCATCATTCTTGATGATTAGAGTTTACAGAAAAAGGAAGCAAGATTTGAAAAGGTCATGGAAACTGACTTCCTTTCAGAGGCTGAGTTTCACAAAATCAAACATTGTGTCATCAATGACAGAACACAATATTATAGGCCGTGGTGGGTATGGGGCAGTATATCGTGTTGCTGTTGATGGTTTAGGCTATGTTGCCGTGAAAAAGATATGGAGTAGCAGGAAGTTAGAGCAGAATCTTGTCAATTCTTTTCTAGCAGAAGTTGAAATACTGAGCAATATTCGTCATACTAACATTGTAAAGTTGCTGTGTTGTATCTCCCGTGAGGATTCTTTGCTCCTTGTCTATGAATATATGGAAAACCACAGCCTTGATAGGTGGCTGCACAAGAAAGGTAAGGCATCAGCTATGTCAAATTCAGTGCTTGATTGGCCAAAGAGATTGCATATAGCTATTGGAGCTGCACAAGGTTTGTGCTACATGCATCATGACTGCTTACCGCCGGTTGTTCATCGAGATGTGAAAACAAGTAACATTCTGTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCCAAGATGTTGATCAAGCCAGAAGAACTTGCTACCATGTCAGCTGTGGCTGGTACATTTGGCTACATTGCTCCAGAATATGCTCAAACAACGCGTGTTAATGAGAAGATAGATGTCTATAGCTTTGGAGTTATTCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGAGATGAATATTCATCCCTTGCTGAATGGGCATGGCGCCACATTCAGGTAGGAAGCGATATAGAAGATATTCTGGATGAAGAAATTAAGGAAGCTTGTTACACGGATGAAATGCGCAACATCTTCAAACTTGGAGTCATGTGCACTTCAACACTGCCAGCTAGTAGACCTTCCATGAAGGAGGTCCTGAAAGTATTGCACCGCTGCAGTGATCCACTTGCCAATGGAGAGAAGAACATTGGTTTCTACGATGCTGTTCCACTTCTTAAGAACTCAAAATGGGAAAAGCAGGTGGAATATTACACTGATGATGATTGA 3036 0.4074 MKKIITSCAKMPVLSLFSLFLFLTYANSQSHSLLYDQEHAVLLKIKQYLQNPSFLNHWIPSNSSHCSWPEISCTNDSVTKLAMINTNITQTLPPFLCDLKNLIHIDFQWNCIPSEFPTSLYNCSKLEYLDLSQNYFVGKIPYDIDRLARLSFLNLGGNNFSGDIPANIGRLKELTSLQLHQCLFNGTFLADIGNLSNLETLYMFSNSMLPPTKLPSSLTQLNKLKVFYMYGSNLAGEIPEAIGEMVALEQLDLSGNGLSGQIPNGLFMLKNLSILYLYNNNLSGEIPGMVEAFNLTRLDLSHNSLSGKIPDDLGKLNKLTYFGLSMNQLSGKVPKSIGQLPALTDFVVFLNNLSGTLPQDFGRFSNLETFQVASNSFTGRLPQNLCYYGRLVGLTAYDNYLSGELPESLGSCNSLQYLRVDNNELSGKIPSGLWTSMNLSTFMINDNKFTGELPERLSLNLSVLAISYNQFSGRIPRGVSSWKNVVVFNASNNLFNGSIPLELTSLPQLTTLLLDHNQLTGPLPSHIISWKSLITLNLSHNQLSGEIPDAISLLHALNILDLSENEISGQIPLQLALKGLTNINLSSNHLTGRIPIEFENLVYANSFLNNSDLCADTLALNLTLCNSRPRRARNGSSASHAMITTLVVVSSLLAFLSSFLMIRVYRKRKQDLKRSWKLTSFQRLSFTKSNIVSSMTEHNIIGRGGYGAVYRVAVDGLGYVAVKKIWSSRKLEQNLVNSFLAEVEILSNIRHTNIVKLLCCISREDSLLLVYEYMENHSLDRWLHKKGKASAMSNSVLDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKTSNILLDSQFNAKVADFGLAKMLIKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVILLELTTGKEANHGDEYSSLAEWAWRHIQVGSDIEDILDEEIKEACYTDEMRNIFKLGVMCTSTLPASRPSMKEVLKVLHRCSDPLANGEKNIGFYDAVPLLKNSKWEKQVEYYTDDD* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1179 1011 SUPERFAMILY RNI-like 293 601 - -
Apr6g1179 1011 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Apr6g1179 1011 Pfam Leucine rich repeat 507 567 IPR001611 GO:0005515
Apr6g1179 1011 SUPERFAMILY Protein kinase-like (PK-like) 687 972 IPR011009 -
Apr6g1179 1011 ProSiteProfiles Protein kinase domain profile. 695 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1179 1011 ProSiteProfiles Leucine-rich repeat profile. 532 554 IPR001611 GO:0005515
Apr6g1179 1011 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 14 1003 - -
Apr6g1179 1011 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 14 1003 - -
Apr6g1179 1011 SMART serkin_6 695 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1179 1011 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Apr6g1179 1011 Gene3D Ribonuclease Inhibitor 212 347 IPR032675 -
Apr6g1179 1011 Gene3D Ribonuclease Inhibitor 35 211 IPR032675 -
Apr6g1179 1011 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515
Apr6g1179 1011 ProSiteProfiles Leucine-rich repeat profile. 294 317 IPR001611 GO:0005515
Apr6g1179 1011 SUPERFAMILY L domain-like 43 378 - -
Apr6g1179 1011 Gene3D Phosphorylase Kinase; domain 1 677 773 - -
Apr6g1179 1011 PRINTS Leucine-rich repeat signature 295 308 - -
Apr6g1179 1011 PRINTS Leucine-rich repeat signature 554 567 - -
Apr6g1179 1011 Gene3D Ribonuclease Inhibitor 348 624 IPR032675 -
Apr6g1179 1011 Gene3D Transferase(Phosphotransferase) domain 1 774 986 - -
Apr6g1179 1011 Pfam Protein kinase domain 697 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1179 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Apr6g1179 1011 SMART LRR_typ_2 147 171 IPR003591 -
Apr6g1179 1011 SMART LRR_typ_2 554 579 IPR003591 -
Apr6g1179 1011 SMART LRR_typ_2 506 530 IPR003591 -
Apr6g1179 1011 SMART LRR_typ_2 195 221 IPR003591 -
Apr6g1179 1011 SMART LRR_typ_2 294 316 IPR003591 -
Apr6g1179 1011 SMART LRR_typ_2 245 269 IPR003591 -
Apr6g1179 1011 SMART LRR_typ_2 99 123 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1179 Apr-Chr6 16433652 16437165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1179 38 974 Receptor kinase-like Gene Family AT5G25930 52.229 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr6g1179 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1179 - - gmx:100785907 1646.33