Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1178 ATGGAGGATCGAGGAAAGAACGATCCTAATCTTGCAATGTTTTCTCGAACGAGAAATAGAAGACTTTCAAATTACATCATTCTATACAATCGTTACTCTCAGTTGCATGATCAAGAACATGCAGTGCTATTGAAGATAAAGCAATACCTTGAAAACCCTTCATTTCTTAGTCACTGGACACCATCAAACACCTCCTATTGTTCTTGGCCAGAGATCACTTGCACCAATGATGGCTCAATCACTGGACTCATTTTGGCCAACGTTAGCATCCCTCAAACCATACCACCTTTCATATGTGACCTTAAAAATCTCACTCATGTTGATTTCACTGGCAATTTAATTCCTGGAGAGTTCCCAACATATCTCTACAACTGTTCCAAGTTGGAGTACCTTGATCTCTCTATGAACAACTTTGTTGGTAACATTCCTAATGACATTGATCGCTTGTCAAATTTGCAGTTTCTTAGCCTTGGTTACACCAACTTCTCTGGTGACATCCCTACCAGCATTGGAGGGCTAAAGGAACTAACTTATCTTGGACTTCAATATTGTCTATTTAATGGAACTCTCCCTGGTGAGATTGGCAACTTGTCCAATCTTGAAACCTTGGACTTGTCCTCGAACAATATGTTCCCTCCTTCAAGGTTGCCAACTAACTGGACCCAGTTGACCAAATTGAAGGTTTTTTACATGTATGACTCAAACTTGGTTGGCGAGATACCTGAAAGCATTGGACAGATGGTGGCTTTGGAAAAATTGGATATATCACAAAATAATTTAACTGGGCCAATTCCTAGTAGTTTGTTCATGCTGAAGAATCTAAGCACAATGTTTCTTTCAAGAAACAAGCTTTCTGGGGAGCTACCTGGTGTTGTTGAAGCATTGGATTTGACCATCATTGATCTTTCAAGGAACAATCTTTCAGGAAAAATACCAGATGATTTTGGAAAGCTTCAAAAGTTAACAGGTTTGGCTTTGTCTATGAATAACTTTTCAGGGGAAATACCACAAAGCATAGGCCTTCTTCCATCTCTGGTAGATTTTCGTGTCTTTATCAACAATTTATCAGGTACCATTCCTCCTGATTTTGGCCTCTACTCGCAAAAGCTTGAGACCTTTATGATTTCAACTAATAGTTTAAGTGGAAACTTACCTGAAAACTTATGCTATCATGGTCACTTGCTTAATTTATCAGTCTATGAAAATAACCTGAGTGGAGAGTTGCCACAATCACTCGGGAATTGTAGTAGCCTGATAGATTTGAAAATTTATAATAACGAGTTTTCTGGTAACATTCCTAGTGGTCTTTGGACTTTCAATTTGTCAAATTTCATGGTAAGAAATAATAAGTTTACTGGTGAGCTTCCTGAGAGATTGTCCCCAAGTATTTCACGCTTTGAGATAAGTTACAATCAGTTTTCTGGTAGGATTCCAAGTGGAGTATCTTCTTGGACTAATGTGGTAGTGTTTAATGCCAGTCACAACAACCTTAATGGAAGTATTCCAAAAGAGTTAACAGCTCTTCCCAAGCTAACAACTTTGCTACTTAATCAGAATCAACTCACAGGGCCACTTCCATCAGATATAATATCATGGCAATCCTTAGTAACTCTAAATTTGAGCCAAAACCAACTCTCTGGACAAATCCCAGATTCATTTGGTCTTTTACCTGTCCTTAGCCAACTTGACTTGTCAGAAAATCAATTCTCTGGTCAAATTCCTTCAATACTTCCTAGACTCACCAATCTCAATCTATCCTCCAATCATTTGACTGGAAGGGTTCCAAGTGAATTTGAGAATTCTGTGTATTCCACTAGCTTTTTGGACAATTCTGGTCTCTGTTCTGAAACTCCATCACTGAACCTTATGTTGTGCAATTCTAGCCCTCAAGGGTCAAGCAAGGGCTCATCTTGGTCTCTGGCTTTGATTATAAGCTTGGTGGTAGTGGCTTGCTTATTGGCTTTGTTGACATCACTCTTGATTATCAGATTTTATAGAAAAAGAAAGCAAGGATTGAATGATTCATGGAAGCTTATTTCTTTTCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCATCATTGACAGAACATAACATCATTGGTAGTGGTGGATATGGCACTGTGTACCGCGTTGAAGTTGATGGCTTAGGCTATGTTGCTGTGAAGAAGATTTGGGAAAACAAGAAGTTAGATCAGAATCTTGAGAGCTCATTTCATAATGAAGTTAAAATATTAAGCAACATTCGTCATAAAAACATTGTGAAGTTAATGTGTTGTATCTCTAAAGAGGATTCTATGCTCCTTGTATACGAGTATGTGGAAAACCGTAGCCTTGATAGGTGGCTACACAAGAAGATCAAATCATCAACTGTGTCAGGTTCAGTCTCTCATGTTGCCCTTGATTGGCCAAAGAGATTGAAAATTGCCATTGGAGCTGCACAAGGTTTGAGTTACATGCATCATGATTGCTCACCACCTATTGTTCATAGAGATGTTAAAGCAAGCAACATTCTTTTGGACACTCAATTCAATGCCAGAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATCAAGCCAGGGGAACTGGCCACCATGTCAGCTGTGATTGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTAGAGTGAGTGAAAAGTTTGATGTGTTTAGCTTTGGTGTTATCCTATTGGAATTGACAACTGGTAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCTGAATGGGCATGGCGCCACCACCAATTAGGAAGCAATATAGAAGAGTTATTAGACATTGATGTAAAGGAATCCAGTTACTTGAATGGTATGTGTAAGGTTTTCCAACTTGGGATCATGTGTACTTCAACACTTGCTGTTACTAGACCTTCTATGAAAGAGGTTTTGCAAGTATTGCTCTCTTTGGATGAATCTATGTCTTATGGAGAGAGGAATAATGTTGGCCACAATGATGATGTTCCACTTCTTAGAAATTCAAAGAGAGAGTACAAGTTGGATATTGATAATGACAGCTAG 3048 0.3875 MEDRGKNDPNLAMFSRTRNRRLSNYIILYNRYSQLHDQEHAVLLKIKQYLENPSFLSHWTPSNTSYCSWPEITCTNDGSITGLILANVSIPQTIPPFICDLKNLTHVDFTGNLIPGEFPTYLYNCSKLEYLDLSMNNFVGNIPNDIDRLSNLQFLSLGYTNFSGDIPTSIGGLKELTYLGLQYCLFNGTLPGEIGNLSNLETLDLSSNNMFPPSRLPTNWTQLTKLKVFYMYDSNLVGEIPESIGQMVALEKLDISQNNLTGPIPSSLFMLKNLSTMFLSRNKLSGELPGVVEALDLTIIDLSRNNLSGKIPDDFGKLQKLTGLALSMNNFSGEIPQSIGLLPSLVDFRVFINNLSGTIPPDFGLYSQKLETFMISTNSLSGNLPENLCYHGHLLNLSVYENNLSGELPQSLGNCSSLIDLKIYNNEFSGNIPSGLWTFNLSNFMVRNNKFTGELPERLSPSISRFEISYNQFSGRIPSGVSSWTNVVVFNASHNNLNGSIPKELTALPKLTTLLLNQNQLTGPLPSDIISWQSLVTLNLSQNQLSGQIPDSFGLLPVLSQLDLSENQFSGQIPSILPRLTNLNLSSNHLTGRVPSEFENSVYSTSFLDNSGLCSETPSLNLMLCNSSPQGSSKGSSWSLALIISLVVVACLLALLTSLLIIRFYRKRKQGLNDSWKLISFQRLSFTESNIVSSLTEHNIIGSGGYGTVYRVEVDGLGYVAVKKIWENKKLDQNLESSFHNEVKILSNIRHKNIVKLMCCISKEDSMLLVYEYVENRSLDRWLHKKIKSSTVSGSVSHVALDWPKRLKIAIGAAQGLSYMHHDCSPPIVHRDVKASNILLDTQFNARVADFGLARMLIKPGELATMSAVIGSFGYMAPEYVQTTRVSEKFDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHHQLGSNIEELLDIDVKESSYLNGMCKVFQLGIMCTSTLAVTRPSMKEVLQVLLSLDESMSYGERNNVGHNDDVPLLRNSKREYKLDIDNDS* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1178 1015 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Apr6g1178 1015 Gene3D Ribonuclease Inhibitor 294 366 IPR032675 -
Apr6g1178 1015 Gene3D Ribonuclease Inhibitor 190 293 IPR032675 -
Apr6g1178 1015 Gene3D Ribonuclease Inhibitor 36 189 IPR032675 -
Apr6g1178 1015 SUPERFAMILY Protein kinase-like (PK-like) 688 976 IPR011009 -
Apr6g1178 1015 Pfam Protein kinase domain 697 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1178 1015 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Apr6g1178 1015 Gene3D Phosphorylase Kinase; domain 1 672 773 - -
Apr6g1178 1015 SUPERFAMILY RNI-like 296 601 - -
Apr6g1178 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Apr6g1178 1015 ProSiteProfiles Leucine-rich repeat profile. 534 556 IPR001611 GO:0005515
Apr6g1178 1015 CDD STKc_IRAK 701 979 - -
Apr6g1178 1015 SUPERFAMILY L domain-like 45 365 - -
Apr6g1178 1015 Gene3D Transferase(Phosphotransferase) domain 1 774 997 - -
Apr6g1178 1015 ProSiteProfiles Protein kinase domain profile. 695 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1178 1015 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 30 1008 - -
Apr6g1178 1015 Pfam Leucine Rich Repeat 297 318 IPR001611 GO:0005515
Apr6g1178 1015 Pfam Leucine Rich Repeat 250 268 IPR001611 GO:0005515
Apr6g1178 1015 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 30 1008 - -
Apr6g1178 1015 SMART LRR_typ_2 508 532 IPR003591 -
Apr6g1178 1015 SMART LRR_typ_2 247 271 IPR003591 -
Apr6g1178 1015 SMART LRR_typ_2 197 223 IPR003591 -
Apr6g1178 1015 SMART LRR_typ_2 577 600 IPR003591 -
Apr6g1178 1015 SMART serkin_6 695 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1178 1015 Gene3D Ribonuclease Inhibitor 367 631 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1178 Apr-Chr6 16427974 16432110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1178 32 976 Receptor kinase-like Gene Family AT5G25930 51.572 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr6g1178 Pkinase 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1178 - - gmx:100798963 1558.12