Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1171 ATGGGTTCTGCTCAATGCTTAACATTCTTGTCATGGGCTTTGGATTTTTGGTATGGTGCTGAGGCTGGAAGCATGACTTCTGACTTTGCCAAGAGTGCAACAGCAGTGGCATCTCTAGCAATTAAAATGGGTTCTCCTAAAAACGAAGAGATGAGAAAGAAAGAAAGAACTTCCATAACTATCATTTTGAGATATGCTGATTGGATTGACATTTTGCTTATGTTAATGGGTGCTTTGGGAGCAATAGGAGATGGCATGACCACAAATGTTTTGTTGCTGTTTGCTAGCCGTATAATGAACAGCTTAGGTTACAGCAATAACCAACAAAGTGGTAAGACTTCCATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGCTATGGTGGTGGCTTTCATGGAAGGGTATTGCTGGAGTAAAACAAGTGAGAGGCAAGTTTTGAGGATTCGCTACAAGTATTTAGAAGCTGTACTGAGACAAGAAGTGGGGTTTTTTGATTCACAAGAAGCAACTACTTCTGAAATCATTAATAGCATATCAAAGGATACTTCTCTCATACAAGAAGTTCTAAGTGAAAAGGTGCCCCTATTTTTCATGCACTCATCATCATTCATCTCTGGGGTTGCATTTGCCACGTACTTCTCTTGGAGGTTGGCTTTAGTTGCATTTCCAACGCTGCTTTTGCTCATTATCCCTGGCATGATTTATGGCAAATACTTAATCTATTTGACAAAATCGTGTGTTAAAGAGTATGGCAAAGCAAACGCTATTGTGGAACAGGCACTTAGCTCTATCAAAACTGTTTATTCATTCACTTCGGAGAAGAGAATCATTGGGAGATATTCAGATATATTGGATAGAACTTCAAGGCTTGGAATCAAACAAGGCATAGCCAAAGGTGTGGCTGTAGGAAGCACAGGTCTCTCTTTTGCAATATGGGCTTTCATTGCTTGGTATGGAAGCCGTTTGGTTATGTATAAAGGTGAAAGCGGAGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCCCTTGGAGTGGTACTTCCTGATTTGAAGTACTTCACTGAAGCATCTGTTGCTGCTTCAAGAATATTTGAAATGATTGACCGAATACCAATGATTGATGGTGAAGACACAAAAGGTCTAGTGTTAGAGAGCATTAGTGGAAAGCTAGATTTTGACCATGTCAAATTCACATACCCTTCTCGTCCCGATATGATTGTTCTTAGTGATTTCAATCTCCAAGTGGAAGCTGGGAAAACTGTTGCACTAGTTGGTGCAAGTGGAAGTGGTAAATCCACTGCAATAGCATTAGTCCAACGATTTTATGATGTAGATGAAGGTGTTGTGAAGGTTGATGGAGTAGACATAAAAAGCCTTCAATTAAAATGGATGCGAGGGAAAATGGGCCTTGTAAGCCAAGAACATGCATTGTTTGGCACATCTATAAAGGAGAATATTATGTTTGGGAAGCCTGATGCTACCACAGATGAAATAGTTGCTGCAGCCACTGCAGCCAATGCTCATAACTTCATAAGACAGCTTCCTGAAGGGTATGAAACCAAGATTGGAGAAAGAGGGGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATAATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATTACTAGTTCAGAATGCCCTTGACCAAGCCTCCATGGGGAGGACCACTTTGATTGTTGCCCACAAGCTATCAACAATTCGAAATGCAGACCTTATAGCAGTTGTTAGTGGTGGTCGCATCATTGAAAAAGGCACACATAATGAACTCCTTAATTGCCCAAATGGGCATTATGCAAAATTGGCAAAATTACAGACACAATTAAGCATGGATGACCAAGATCAAAATCTAGAACTAGGGCTTCTTTCTTCAGCAAGAAGTAGTGCAGGTAGACCAAGCACTGCCAAGTCAAGCCCTGCCATCTTTCCAAAGTCACCATTGCTTCCTGAAACCATCCCATCTCCAATTTCTCACCCTCCACCTTATTTTCTAAGGCTTCTTTCTTTAAATGGTCCTGAATGGAAACAAGGTCTAATTGGAACATTTTCAGCTATAGCCTTTGGCTCAGTTCAACCCTTATATGCTTTAACCATTGGGGGTATGATTTCAGCCTTTTTTGCTGAAAGCCATCAAGAAATGAGACATAGAATAAGGACTTATTCTTTAATTTTCTGTTCTCTTTCCTTTGCTTCTATTATCCTCAACCTCTTGCAACACTACAATTTTGCTTATATGGGAGCCAAGTTAACCAAAAGGATAAGGCTGTGCATGCTAGAGAAGATCTTAACCTTTGAAACTGCTTGGTTTGATGATGAACAAAATTCCTGTGGAGCATTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTTAAGTCCCTTGTTGCAGATAGACTCTCTTTACTTGTTCAAACCACTTCTGCTGTCACCATTGCTATGATCATAGGGCTTGCTGTGGCTTGGAAACTTGCTCTTGTTATGATAGCTGTGCAACCACTTACAATCCTTTGCTTTTATACACGAAAAGTGTTGCTTTCCACCCTTTCAACCAAATTTGTTAAGGCACAGAATCAAAGTACACAAATTGCAGTGGAGGCAGTTTATAATCATAGAATTGTAACTTCATTTGGAAGCATCACAAAAGTTCTAGGACTATTTGATGAGGCTCAAGAGGCTCCAAGGAAGGAAGCAAGGAAGAAGTCTTGGCTAGCTGGCATAGGAATGGGTTCTGCTCAATGCTTAACATTCTTGTCATGGGCTTTGGACTTTTGGTATGGTGGTACTTTGGTTGAAAAAAGACAAATATCAGCAGGGGATGTGTTCAAGACATTTTTTGTATTGGTTAGCACTGGTAAGGTCATAGCTGAGGCTGGAAGCATGACTTCTGACCTTGCCAAGAGTTCAACAGCAGTAGCATCTGTGTTTGAAATTCTTGACCGAAAATCACTAATTCCCAAGGCTGGAGATAGCACTAATGGGGTTAAGTTGGAAAAAATAAGTGGAAAGATAGAATTGAAGAATGTTGACTTTGCTTATCCAAGCAGAGCAGGGACGCCAATTTTGTGCAAATTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGACTAGTTGGGAAAAGTGGATGTGGAAAATCAACAGTGATTGCTTTAATTCAAAGATTCTATGATGTTGAAAGAGGGTCAGTCAAAGTGGATAATATGGACATAAGGGAATTAGACATTTATTGGTATAGGCAACACACAGCACTTGTTAGCCAAGAACCTGTGATATATTCTGGCAGCATTCGTGATAACATTTTGTTTGGGAAGCAAGATGCTACAGAGAATGAAGTAGTTGAGGCTGCCAAAGCTGCAAATGCTCATGAATTCATATCATCATTGAAAGAAGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAATTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTCGGAACCCAATAATACTGCTCTTAGATGAGGCAACAAGTGCCTTGGACGTGCAATCAGAACAAGTGGTGCAAGAAGCACTTGATAGAATCATGGTAGGAAGAACTACCATTGTTGTGGCACATAGGCTTAACACCATCAAAGAGCTTGACTCAATTGCCTATGTATCAGAAGGCAAGGTTCTAGAGCAAGGAACCTATGCTCAGCTTAGGCACAAGAGAGGTGCATTCTTCAACCTTGCCAGTCACCAAATCCAAACTTAA 3828 0.4075 MGSAQCLTFLSWALDFWYGAEAGSMTSDFAKSATAVASLAIKMGSPKNEEMRKKERTSITIILRYADWIDILLMLMGALGAIGDGMTTNVLLLFASRIMNSLGYSNNQQSGKTSMAEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFFMHSSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLTKSCVKEYGKANAIVEQALSSIKTVYSFTSEKRIIGRYSDILDRTSRLGIKQGIAKGVAVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFEMIDRIPMIDGEDTKGLVLESISGKLDFDHVKFTYPSRPDMIVLSDFNLQVEAGKTVALVGASGSGKSTAIALVQRFYDVDEGVVKVDGVDIKSLQLKWMRGKMGLVSQEHALFGTSIKENIMFGKPDATTDEIVAAATAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLIVAHKLSTIRNADLIAVVSGGRIIEKGTHNELLNCPNGHYAKLAKLQTQLSMDDQDQNLELGLLSSARSSAGRPSTAKSSPAIFPKSPLLPETIPSPISHPPPYFLRLLSLNGPEWKQGLIGTFSAIAFGSVQPLYALTIGGMISAFFAESHQEMRHRIRTYSLIFCSLSFASIILNLLQHYNFAYMGAKLTKRIRLCMLEKILTFETAWFDDEQNSCGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLGLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFLSWALDFWYGGTLVEKRQISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDSTNGVKLEKISGKIELKNVDFAYPSRAGTPILCKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKVDNMDIRELDIYWYRQHTALVSQEPVIYSGSIRDNILFGKQDATENEVVEAAKAANAHEFISSLKEGYETECGERGVQLSGGQKQRIAIARAIIRNPIILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLASHQIQT* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1171 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1035 1271 IPR003439 GO:0005524
Apr6g1171 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 400 636 IPR003439 GO:0005524
Apr6g1171 1275 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 1016 - -
Apr6g1171 1275 CDD ABC_6TM_Pgp_ABCB1_D1_like 74 373 - -
Apr6g1171 1275 SUPERFAMILY ABC transporter transmembrane region 62 384 IPR036640 GO:0005524|GO:0016021
Apr6g1171 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 638 IPR027417 -
Apr6g1171 1275 Gene3D - 390 639 IPR027417 -
Apr6g1171 1275 Pfam ABC transporter 418 567 IPR003439 GO:0005524
Apr6g1171 1275 Pfam ABC transporter 1058 1202 IPR003439 GO:0005524
Apr6g1171 1275 Gene3D - 1025 1275 IPR027417 -
Apr6g1171 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 998 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g1171 1275 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 20 IPR039421 -
Apr6g1171 1275 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 56 1272 IPR039421 -
Apr6g1171 1275 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 56 1272 - -
Apr6g1171 1275 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 1 20 - -
Apr6g1171 1275 ProSitePatterns ABC transporters family signature. 539 553 IPR017871 GO:0005524
Apr6g1171 1275 CDD ABC_MTABC3_MDL1_MDL2 401 638 - -
Apr6g1171 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1272 IPR027417 -
Apr6g1171 1275 Gene3D ABC transporter type 1, transmembrane domain 62 1002 IPR036640 GO:0005524|GO:0016021
Apr6g1171 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 75 365 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g1171 1275 ProSitePatterns ABC transporters family signature. 1174 1188 IPR017871 GO:0005524
Apr6g1171 1275 Pfam ABC transporter transmembrane region 711 981 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g1171 1275 Pfam ABC transporter transmembrane region 75 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g1171 1275 SUPERFAMILY ABC transporter transmembrane region 698 1012 IPR036640 GO:0005524|GO:0016021
Apr6g1171 1275 SMART AAA_5 427 619 IPR003593 -
Apr6g1171 1275 SMART AAA_5 1062 1254 IPR003593 -
Apr6g1171 1275 CDD ABC_MTABC3_MDL1_MDL2 1035 1272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1171 Apr-Chr6 16345292 16364526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1171 27 638 Calmodulin-binding Proteins AT2G36910 34.566 1.76e-101 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1171 K05658 - gmx:100801088 2150.55