Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1160 ATGGGTGAGGCTTCGAGCCCAGAAACAGACACGAACTGCACTTCACCCTCTTCATCACCTCCACCATCGAACTCGAAGAAGCGAGGGAGAGAGAACACTAACACAAAGCACCCACTCTACAGAGGGGTTCGAATGCGCACGTGGGGAAAATGGGTATCCGAAATCCGCGAGCCACGTAAGAAGAACCGAATCTGGCTAGGCACGTTCGCCACCGCCGAGATGGCGGCGCGTGCACACGACGTCGCCGCGTTAACCATAAAAGGCTCCTCCGCAATCCTCAACTTCCCCGAACTCGCTTCCTCTCTGCCCCGACCCGCTTCCAACTCGCCCCGAGACGTTCAAGCCGCCGCCGCCAAGGCCGCTTCCATGGAGGCTCCTCCTCTCACCCCTCCCTCCCCAGCGTCCACGCCGGAGGATCTCGCCGAGATTGTGGAGCTTCCGCCGTTGGGAACGAGTTTCGAATCGCCCGACCCGTCTACCGAGTTCGTTTTCTTCGACCCGGATGATGGGTGGCCCTATTCTCACCCGTGGTTACACGGCATTCATGACGGTGGGTACTTCGTTGGTGACATGAACTCGATATCACTGTGGCCTTAG 597 0.5896 MGEASSPETDTNCTSPSSSPPPSNSKKRGRENTNTKHPLYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELASSLPRPASNSPRDVQAAAAKAASMEAPPLTPPSPASTPEDLAEIVELPPLGTSFESPDPSTEFVFFDPDDGWPYSHPWLHGIHDGGYFVGDMNSISLWP* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1160 198 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Apr6g1160 198 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Apr6g1160 198 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Apr6g1160 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 187 - -
Apr6g1160 198 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Apr6g1160 198 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Apr6g1160 198 MobiDBLite consensus disorder prediction 1 38 - -
Apr6g1160 198 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Apr6g1160 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 187 - -
Apr6g1160 198 MobiDBLite consensus disorder prediction 102 138 - -
Apr6g1160 198 MobiDBLite consensus disorder prediction 1 28 - -
Apr6g1160 198 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Apr6g1160 198 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1160 Apr-Chr6 16238909 16239530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1160 7 177 AP2-EREBP Transcription Factor Family AT5G11590 53.061 2.78e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr6g1160 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1160 K09286 - gmx:100804801 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1391 2 20000630 20001817 Apr6g1160 6 16238909 16239530 PCT