Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1156 ATGGTTGTAATTACGAGTTGTGATGACAATGTTGCTGCTACAAGCAATGAAATTGTGGTGGCTGATGAACATCCTAGTAAAGTTTCATCAGATGTGAGCAACATCATTGTTGAACAACATCCTGAACTGACTGAAACGAATGAATGTTTGGTGGAGCCAAGAGTTAGCCCACCACTTGAAAACATGCCAGAAGTTTACGAAGGCAGAGATCACAAGAGGTCAATGAGTGGTACTGATGAGGATGATTCTATTCAAAAGAGAACCAAGTTCATCGATCCTTCCATTCAACAGGAACCATTAGTTGAAGTTCGCGAAAACTCTGGCTCAAGTGATTGTGAAGAGACATTTATGGATGCTGAAGATGCTGAAGATGGTGAAGATGTTGATGATGATGTTGAAGATGGTGATGATGATATTGAAGATGGGGAAGATTCAAGCCAAACATTTGTTTTTGATGAACTGGACTTTAGAGGCGTCCTCTTAGTGAAAGAGTCTTTAAGGCTTTTCAATGTTCAGACACTTGAAGAATCTTATTATAAGAATAAACGCGCTGTGAGGAGAAAGAACAATGGGCTAACTGAGGCTTTTCTAACTGCCAAGGTTGAAAAATATAGGAATGTTGAGAAGCAAATTCCTGGACTTACAACATCTAAATATCTCATAGAACAACTTCAGGAAATGGCCAAATTGGGAATGGATAAGGTCCATTTTGCTCAAGAACAAATATCCAAAGCTCTTTCTGATAATCCATGCTTGGTATGCAGGGACCTTAGTAGTGGTCAAGAATTATTGGCGATTCCTGTTACCAATGAATATGACGATCCTCCTATTGCACCTAATGGCTTTACATATATAAAATCATTGCAACTTGCGGAAAATATAGAATTTCCACCTAATGACTTTGGATGCAAATGCAAGGGGAATTGTAGATATAGTTGTCGTTGTGCCAAACTTAATGGTTTGAATTTCCCTTACGTTAATCGAAATGGTGGCAGGTTGACCGAAGCTAGAAACGTTGTGTTTGAATGTGGTTCAAATTGTGGTTGCGGACCCAATTGTCGCAACAAAGTATCTCAAACGACTATAAAGTATCGGCTTGAGGTTTATCGCACATCCCAAAAAGGATGGGCTGTTAGAACATGGGATTTTGTTCCTTCTGGTGCACCAGTTTGTGAATACGTTGGCATACTTAGAAAAAGCAACGAGTTGGATGATGAGGCAGAGAACGAATATATATTTGACGTTGATTTCTTGCAAACCATTAAAGGGGTAGACGGACGACAAAAACGGGCACCCAATGCATCATTGCCTATAGACGTTTATGTTGAAGAGCAGGATGATGAGACAATGGAGGATGAGCCTGAGTTTTGTATAGATGCTGGATCTTATGGTAATGTTGCAAGATTTATCAACCACAGTTGTGAGCCAAACCTCTTTGTTCAATGTGTTTTGAGCTCCCATTTTAAAGTTGGACTAGCTCGGCTGGTACTGTTTGCTGGACAAAACATACATCCTTATGAGGAACTCACATATGACTATGGTTACAAGCTTAACAGTGTTACTGATCGGGATGGAAATATCAAGCAGATGCCTTGTTATTGTGGTACTGCAGAGTGTCGTAAGCGCTTATACTAG 1635 0.3994 MVVITSCDDNVAATSNEIVVADEHPSKVSSDVSNIIVEQHPELTETNECLVEPRVSPPLENMPEVYEGRDHKRSMSGTDEDDSIQKRTKFIDPSIQQEPLVEVRENSGSSDCEETFMDAEDAEDGEDVDDDVEDGDDDIEDGEDSSQTFVFDELDFRGVLLVKESLRLFNVQTLEESYYKNKRAVRRKNNGLTEAFLTAKVEKYRNVEKQIPGLTTSKYLIEQLQEMAKLGMDKVHFAQEQISKALSDNPCLVCRDLSSGQELLAIPVTNEYDDPPIAPNGFTYIKSLQLAENIEFPPNDFGCKCKGNCRYSCRCAKLNGLNFPYVNRNGGRLTEARNVVFECGSNCGCGPNCRNKVSQTTIKYRLEVYRTSQKGWAVRTWDFVPSGAPVCEYVGILRKSNELDDEAENEYIFDVDFLQTIKGVDGRQKRAPNASLPIDVYVEEQDDETMEDEPEFCIDAGSYGNVARFINHSCEPNLFVQCVLSSHFKVGLARLVLFAGQNIHPYEELTYDYGYKLNSVTDRDGNIKQMPCYCGTAECRKRLY* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1156 544 ProSiteProfiles Post-SET domain profile. 528 544 IPR003616 -
Apr6g1156 544 Pfam Pre-SET motif 258 356 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr6g1156 544 Pfam SET domain 375 514 IPR001214 GO:0005515
Apr6g1156 544 SUPERFAMILY SET domain 245 520 IPR046341 -
Apr6g1156 544 ProSiteProfiles Pre-SET domain profile. 301 361 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr6g1156 544 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 199 543 - -
Apr6g1156 544 Gene3D SET domain 247 544 IPR046341 -
Apr6g1156 544 SMART preset_2 254 348 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr6g1156 544 ProSiteProfiles SET domain profile. 364 514 IPR001214 GO:0005515
Apr6g1156 544 MobiDBLite consensus disorder prediction 114 145 - -
Apr6g1156 544 MobiDBLite consensus disorder prediction 91 145 - -
Apr6g1156 544 SMART set_7 364 520 IPR001214 GO:0005515
Apr6g1156 544 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 199 543 - -
Apr6g1156 544 SMART PostSET_3 528 544 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1156 Apr-Chr6 16210968 16216689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1156 200 544 EF-hand Containing Proteins AT5G13960 52.874 3.36e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr6g1156 SET 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1156 - K11420 aprc:113866803 1073.54