Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1153 ATGAATCAACTCGGTGTTACCCTTTTGGTTCTCTCAATCTTATTCTTCCAAGTTAGAGCACAGAATGACCCTTCAGATGATGCTGTTTCCAATTTCCAGCCAAGCCTTGCAGTTGTCATAGGAATCCTTGGTCTCATGTTTTTCCTAACATTCATTCTTCTCTTGTATGCTAAATTCTGTCAAAGAAGTGCTTCAGCTCCTCTTGGTGACTCAGAAAATCAACAAGCACTTGTGAGATCAAGGTCTAGATTTTCAGGAATTGACAAGACTGTCATAGAATCACTCCCCTTCTTTAGATTCTCTTCCCTCAAAGGGTCAAAGGAAGGGCTTGAATGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAATTCTGAGGCTGCTACCAAAATGCAAACATGCTTTTCATATTGATTGCATAGACCACTGGCTCGAAAAACACTCAAGTTGTCCTATTTGCAGGCACAAGGTCAATTCTGAAGACCTCACAACCTTCACATATTCAAACAGTTTAAGGCGGCTAGTAAATCAATCAGGGCTGGGTGAAGAATCCAACTTAGAGATCTTTGTCCAAAGAGAGGAAGACCATCATGGTTCATCAAGATTTAGCATTGGAAGCAGCTTTAGGAAAATTGGAAAAGATGTTAAGAAAGAAGAATTGCTTATCCAGAAAGGAGAAGAAGATAGTGACGGTAACCAAAAGGGGTATCATAAACATAACCACAGAATCACTATATCTGATGTTGTGTTCAAGCATAGGTGGAGCAACGTGAGTTCTTCAGACCTCATGTTTTTGAATTCAGAGATGCTTAGTGCTACTTCAAGCAACAGGTTCAATGACTTGGAATCAAATGCTGATAATATGTCAACGACAAGAGCACTGGGAGAAAATGAGCAAATCATGAACATCAAGGAGGAGATGGACAGGAAGATTTCCTTTGAGAGCAAAGTTGGTGCACTTAACAAGATTAAATCAATTTCAGATAAGGATAATCTTTTTACATCAGATTCTGCTGGAATTTCTAGTCATGCACCAAAGTATGTGAACCCTGGGGAGAAAAGGTCAATGTCAGAAATCACTGGTGTCTCTAGATTTGGAGATTTTGGCATGAAAAGTAGGGTCTTTAAAGAGTCTTCTTCCCTTGAAGACAACCTTAAAGAGGAAAGAATGAGGCAACTTTGGTTCCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCACAGCAATCTCAGAATAATCAAAAGCCATTAGATGTATAA 1275 0.3937 MNQLGVTLLVLSILFFQVRAQNDPSDDAVSNFQPSLAVVIGILGLMFFLTFILLLYAKFCQRSASAPLGDSENQQALVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNSEDLTTFTYSNSLRRLVNQSGLGEESNLEIFVQREEDHHGSSRFSIGSSFRKIGKDVKKEELLIQKGEEDSDGNQKGYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLSATSSNRFNDLESNADNMSTTRALGENEQIMNIKEEMDRKISFESKVGALNKIKSISDKDNLFTSDSAGISSHAPKYVNPGEKRSMSEITGVSRFGDFGMKSRVFKESSSLEDNLKEERMRQLWFPIARRTAQWFVNRERRSQQSQNNQKPLDV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1153 424 SUPERFAMILY RING/U-box 91 159 - -
Apr6g1153 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 163 IPR013083 -
Apr6g1153 424 Pfam Ring finger domain 111 154 IPR001841 -
Apr6g1153 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 418 - -
Apr6g1153 424 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Apr6g1153 424 SMART ring_2 112 153 IPR001841 -
Apr6g1153 424 CDD RING-H2_PA-TM-RING 111 154 - -
Apr6g1153 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1153 Apr-Chr6 16180404 16181772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1153 6 419 C3H Transcription Factor Family AT4G28890 47.973 7.64e-113 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1153 K10664 - gmx:100803207 694.115