Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1142 ATGTCTGTGCCATTGGAGCAAGGCTATGGAGGGTTAACTGAGGTTCCTGCAATGGAAGGTTCTCAGAGGACTAGCAGTGGCTTGAACCTTAAGGCTACTGAGTTGAGGCTTGGTTTGCCAGGTTCTGAGTCACCAGAAAGAGATGGTGGTGTGGTTATGGAGGACAAGAGTGTTACTGTGCACCCTTTAGGCATGCTCAAGAGTTTGGTGTCTGGGGCTAAAAGGGGTTTCTCAGATACCATTGATGGGGGTTCTGGGACGTGGCTTCTCTCTGGGAATGCTGGATCTGAGGTGGGTTTGGGTAAAGATGGTGCCTTGTTCTCTCCCAGGGGTGTTGGTGTTGGAGCTGGCAAGGTTGAGTGTACCAATCAACAAACTTGTGTTGTCAAAGATAAAGTTCCTCAGTCTCCAAAGCCATTGAATGAGAAGAAGCCTCAGTTATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCTCCAATCCGTTCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAAAAGAATGATGATGATGCAGAAGTCAAGTCTGGGTGCCTTTATGTAAAGGTCAGTATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGGCACTTATCGGGAACTATCTTCAGCACTGGAAAAGATGTTTACTTGTTTTACAATCAGTCAATGTGGTTCCCATGGAGTTTCTAATAGAGATAAGTTGAGTGAAAGTAGATTGATGGACTTGCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACCGACACTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 924 0.46 MSVPLEQGYGGLTEVPAMEGSQRTSSGLNLKATELRLGLPGSESPERDGGVVMEDKSVTVHPLGMLKSLVSGAKRGFSDTIDGGSGTWLLSGNAGSEVGLGKDGALFSPRGVGVGAGKVECTNQQTCVVKDKVPQSPKPLNEKKPQLSAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEVKSGCLYVKVSMDGAPYLRKVDLKNFGTYRELSSALEKMFTCFTISQCGSHGVSNRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCKRLRIMKSSEAIGLAPRAMEKCKSRN* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1142 307 Gene3D - 181 300 - -
Apr6g1142 307 PANTHER AUXIN-INDUCED PROTEIN 17 300 - -
Apr6g1142 307 MobiDBLite consensus disorder prediction 133 153 - -
Apr6g1142 307 MobiDBLite consensus disorder prediction 1 25 - -
Apr6g1142 307 Pfam AUX/IAA family 33 298 IPR033389 -
Apr6g1142 307 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Apr6g1142 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 300 IPR003311 GO:0005634|GO:0006355
Apr6g1142 307 SUPERFAMILY CAD & PB1 domains 184 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1142 Apr-Chr6 16070890 16074110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1142 190 292 B3 DNA Binding Superfamily AT2G46530 33.981 1.44e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr6g1142 AUX_IAA 1.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1142 K14484 - gmx:100803754 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1406 2 20116055 20118883 Apr6g1142 6 16070890 16074110 PCT