Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1141 ATGAATAGAGGTGTTCTTCAGAGCTCACCGGTGCAACAAATGATGACTGGAAACCCTAACTGGTGGAGCATCAATATCAATACCATGCCTCCTCAAGCTCCTCCTTTCTTATCCACTCCTTCCAACTTTCCTTCCCCTTATGCACCCACCTCTTCTCTTCCCTTTCCTTCTTGGCATGACAATAATCAAGACCTTCCTGAGTCATGGAGCCACCTACTTATGAGTGGGGTGGTAGGTGAAGAAGATAAGGCTGGTATGGGCCAGTTTCAGACTAAGAAGTTGGAGAACTGGGAGGATCAAATGCTAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAACTCCGCGAGTAGCTATGTGTATGGGCATGGAAATGAAGAACTTCAGTCATCAAAGCCTTCTTGGTCTCCAAAATCATGTGTGACAAGTTTCAGTAGCAACATGTTGGATTTCTCTAACAATAAGACAGATGCGAGGCATCCACCACCAGATCGATCTTCTGAGTGCAACAGCATTGCAGCTGGTGGGGCACTCAAGAAAGCTAGGGTTCAACCTTCCGCTACAGCACAGTCTACATTCAAGGTTAGAAAGGAGAAGTTAGGTGACAGAATCACAGCCCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCTTACTTGAGCGGTGGATCAGGAAACACTAGGCAGCAACATCCTGTTCAAGGGGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGCTTGAAGAGGAAAGCATCTGGAGAGCAGGATCCTCAAGAAGAACCAAAGAAGTGTCTGAGGAGTAGAGGGTTATGTCTGGTTCCAGTGTCATGCACACTCCAAGTTGGAAGTGACAATGGAGCAGACTATTGGGCTCCAGCCTTAGGAGGGGGCTTCCGTTAG 1005 0.4647 MNRGVLQSSPVQQMMTGNPNWWSININTMPPQAPPFLSTPSNFPSPYAPTSSLPFPSWHDNNQDLPESWSHLLMSGVVGEEDKAGMGQFQTKKLENWEDQMLSQAPNASLVDVKQENSASSYVYGHGNEELQSSKPSWSPKSCVTSFSSNMLDFSNNKTDARHPPPDRSSECNSIAAGGALKKARVQPSATAQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSGGSGNTRQQHPVQGEKNCIFPEDPGQLLNENCLKRKASGEQDPQEEPKKCLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1141 334 Gene3D - 189 246 IPR036638 GO:0046983
Apr6g1141 334 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 320 - -
Apr6g1141 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Apr6g1141 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 247 IPR036638 GO:0046983
Apr6g1141 334 CDD bHLH_AtbHLH_like 195 244 IPR045239 -
Apr6g1141 334 PANTHER OS05G0228400 PROTEIN 16 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1141 Apr-Chr6 16037936 16042096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1141 1 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 46.479 1.24e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1141 - - gmx:100786555 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1408 2 20164788 20168630 Apr6g1141 6 16037936 16042096 PCT