Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1136 ATGGATCCTCCACCCAAGAGTTGGACCATCCACACCCGATCCGAAATTACGACCAAGTACGAGGTTCTCGATCAGGTCGGGTCGGGTTCATACGCCGACGTCTACCGTGGACGGCGCCTTTCCGACGGCGCCACGGTGGCCCTGAAGGAGGTTCACGACGGCCAATCGGCGTTCCGGGAAATCGAGGCGTTGAGGGTTCTGAAAGGGTCCCAAAACGTCGTCGTCATGCACGAGTTCTTCTTGCGCGAGGATGAAGATGCAGTGCTTGTTCTCGAGTTTCTGAGAAGCAACCTCGCCACTGTTATTGAAGAAGCTAAGGGTAAAGGTTTGGGTGTTGGAGAGGTTAAGGGGTGGATGATCCAGGTTTTGAGTGGGGTTGATGCGTGTCACCGGAATATGATTGTTCATAGAGACTTAAAGCCCGCGAATTTTTTGGTTTCAGATGATGGGGTTCTCAAGTTGGCGGATTTTGGACAGGCGAGGATACTTATGGAAGCTGGATTTGATGCTCCCTCGGAAAACCCACCACTATACGAGCATGATGCTTCCAATAGTGAAAGTTCACTTCAACATGCTGAAGCTATTTCTCAATCAGATGACATAAACCAAAGTGGTTATGTAAATCAGGATCAGGGAACCATGAGTCATGAAGAATATTTTAAGGTTTTAGATGAGATGAAAATCAAGAGCTACTCATATGATACTGATAAGGACACAAACATTCATGATGGAAACACCTCGTGTCTTGCTACATGCACAACAAGTGACATAGATGATGATCTTTGTAAGGGTTCTTTTACATACGAAGCTGAGGAAGTAGGACGGAATGAACTTGGTTGTCTCACATCATGTGTCGGAACAAGGTGGTTCCGGGCACCGGAGCTACTTTATGGATCCACAGATTATGGTTTAGAGGTTGATCTCTGGTCATTGGGATGTGTCTTTGCAGAACTATTGACATTGAAGCCATTGTTTCCTGGAACAGCTGATATAGATCAGCTTAGCCGAATTATCAGTGTTTTGGGGAATCTCAATGAGGAAACTTGGCCTGGTTGTTCTAAACTTCCTGATTATGGAACAGTGTCATTTGGTGAAGTGGAAAAGCCTATTGATCTTGAAGCATGCATGCCCAATTGCTCCCCTGATGAAGTTTCCCTTGTCAAAAGATTGGTTTGTTATGATCCAACTAAGAGGGCCACTGCAATGGAGTTACTTCAGGACAAGTACTTTAGTGAAGAACCTCTTCCTGTTCCAGTTTCGGAGTTGTGGGTTCCCTTGAGTAGAAATGGACAAGACCAGGATTGCCCTGGTGAGTTTCATGGTTACGATAAAATTGCTTCTGATTCTGATTTGGAGGACTTCAGCACTATGAATATCAATATCACCAAAACTGAGTCTGGACGACGGATATGA 1413 0.4558 MDPPPKSWTIHTRSEITTKYEVLDQVGSGSYADVYRGRRLSDGATVALKEVHDGQSAFREIEALRVLKGSQNVVVMHEFFLREDEDAVLVLEFLRSNLATVIEEAKGKGLGVGEVKGWMIQVLSGVDACHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILMEAGFDAPSENPPLYEHDASNSESSLQHAEAISQSDDINQSGYVNQDQGTMSHEEYFKVLDEMKIKSYSYDTDKDTNIHDGNTSCLATCTTSDIDDDLCKGSFTYEAEEVGRNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTLKPLFPGTADIDQLSRIISVLGNLNEETWPGCSKLPDYGTVSFGEVEKPIDLEACMPNCSPDEVSLVKRLVCYDPTKRATAMELLQDKYFSEEPLPVPVSELWVPLSRNGQDQDCPGEFHGYDKIASDSDLEDFSTMNINITKTESGRRI* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1136 470 Pfam Protein kinase domain 278 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1136 470 Pfam Protein kinase domain 20 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1136 470 Gene3D Transferase(Phosphotransferase) domain 1 241 417 - -
Apr6g1136 470 PANTHER CYCLIN-DEPENDENT KINASE 10 13 419 - -
Apr6g1136 470 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Apr6g1136 470 PANTHER CELL DIVISION PROTEIN KINASE 13 419 - -
Apr6g1136 470 Gene3D Transferase(Phosphotransferase) domain 1 8 199 - -
Apr6g1136 470 ProSiteProfiles Protein kinase domain profile. 20 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1136 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Apr6g1136 470 SMART serkin_6 20 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1136 470 SUPERFAMILY Protein kinase-like (PK-like) 4 426 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1136 Apr-Chr6 16001735 16004709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1136 4 464 Core Cell Cycle Gene Families AT4G28980 60.554 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Apr6g1136 Pkinase 5.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1136 - - gmx:548056 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1410 2 20191297 20194443 Apr6g1136 6 16001735 16004709 PCT