Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1122 ATGTCATCTGCTCCGGCTCCTTCTTCGCCGCCGGCGACCAACGCCACTGCTCCTCCGCCGTCGACCCCAGCCACGCCTTCCGCGCCACCTCCTGCTACTCCTTCCTCCCCACCGCCGGCCACTCCCTCTTCGCCGCCGCCGGCCACTCCATCCTCGCCTCCGCCGGCGACTCCATCCTCTCCACCCCCTGCAACTCCTTCCTCTCCACCTCCGGCGACTCCCTCCGCGCCTGCGCCGGCGACTCCCTCGTCTTCTCCGCCGCCTCCCACCACACCGTCAACCTCTCCGCCTTCGCCGCCGTCCCCGTCCGGTGGCGGCACTACTCCGTCTCCACCGTCTCGGAGCTCGCCCTCTCCTCCGTCGGGCTCGGATCGAACACCACCGTCGCCGGCGTCCAAATCTTCTCCGCCAGCGTCTTCTTCTTCTTCGTCGGGTATTTCAACCGGCGTGGTCGTCGGAATCGCCGTCGGGGCTGTGGCGGTTCTTCTGGTGCTGAGTATTCTGTGCATATGCTGTAGGAAGAAGAAGAGAAGACGCGATCAGGAGTACTACCCGCCACCGCCGCCGCAGCAACCGCTGCGAGGACCCAAAGATGATGCTTATGGCGGTCCACCACGTCACTGGCAACATAATGTTCCTCCTCCTCAAGATCATGTAATCTCAATGATGCCTCCTAAGCCATCACCTCCACCACCTCCGGTTGTGTCGCGGCCGCCCCAATTGTCGGCATTTGCTGCTCAACCTCCTCCTCCGCCGCCTCCTTTCATGAGCAGCAGTGGTGGGTCTGGATCAAACTATTCAGGTGGTGAAAATCCACTTCCACCTCCATCTCCAGGCATTGCATTAGGCTTCTCGAAGAGCACATTCACATATGAGGAGTTGGCGCGTGCAACCGATGGTTTCTCTGATGCTAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAGAGGGATTCTCCCTAATGGTAAGGAGGTGGCTGTGAAGCAGCTGAAGGCAGGAAGTGGGCAAGGGGAGCGTGAATTTCAAGCTGAAGTGGAGATTATTAGTCGTGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCAAACAACACATTGGAATTCCATTTGCATGGAAAAGGGCGACCTACCATGGATTGGCCCACAAGACTACGAATTGCTTTAGGATCTGCCAAGGGACTGGCATATCTTCATGAAGACTGTCATCCTAAGATCATCCATCGTGATATCAAAGCGGCTAATATCCTTCTGGATTTTAAGTTTGAGGCAAAGGTTGCGGATTTTGGTCTTGCAAAGTTTTCTTCTGATGTCAATACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATCTGGCACCAGAATATGCTTCCAGTGGAAAGCTCACAGATAAATCGGATGTTTTCTCATATGGAGTCATGCTCCTTGAGTTAATAACTGGACGTCGTCCGGTTGATAAAACTCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCACACGTGCTTTGGAAGAGGACTATTTTGATGCTCTGATTGACCCAAGGCTCCTAAATGAATATGATCCTAATGAGATGCTACGCATGGTGGCATGTGCTGCGGCTTGCACACGTCATTCCGCAAAACGTCGACCAAGGATGAGCCAGGTTGTTCGAGCTTTGGAAGGAGACGTGTCTCTAGCCGATCTTAACGAAGGAATCCGACCTGGACACAGTACTATGTACAGTTCTCATGAAAGCTCAGACTATGATACTGCACAGTACAAGGAAGACATGAAAAAGTTCAGAAGAATGGCATTGGGAACTCAAGAGTATGGTGCCAGCAGTGAGTACAGTGCAGCTACAAGTGAGTATGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCACAGAGCCGCCAGACCACAAGGGAAATGGAAATGAGAAAGATGAAGAACAGTCAAGGTTTCAGTGGAAGCTCTTGA 2022 0.5292 MSSAPAPSSPPATNATAPPPSTPATPSAPPPATPSSPPPATPSSPPPATPSSPPPATPSSPPPATPSSPPPATPSAPAPATPSSSPPPPTTPSTSPPSPPSPSGGGTTPSPPSRSSPSPPSGSDRTPPSPASKSSPPASSSSSSGISTGVVVGIAVGAVAVLLVLSILCICCRKKKRRRDQEYYPPPPPQQPLRGPKDDAYGGPPRHWQHNVPPPQDHVISMMPPKPSPPPPPVVSRPPQLSAFAAQPPPPPPPFMSSSGGSGSNYSGGENPLPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDYFDALIDPRLLNEYDPNEMLRMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSTMYSSHESSDYDTAQYKEDMKKFRRMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMKNSQGFSGSS* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1122 673 MobiDBLite consensus disorder prediction 218 257 - -
Apr6g1122 673 PRINTS Proline rich extensin signature 7 19 - -
Apr6g1122 673 PRINTS Proline rich extensin signature 19 40 - -
Apr6g1122 673 PRINTS Proline rich extensin signature 40 56 - -
Apr6g1122 673 PRINTS Proline rich extensin signature 58 75 - -
Apr6g1122 673 ProSiteProfiles Protein kinase domain profile. 301 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1122 673 MobiDBLite consensus disorder prediction 631 673 - -
Apr6g1122 673 MobiDBLite consensus disorder prediction 177 281 - -
Apr6g1122 673 Gene3D Transferase(Phosphotransferase) domain 1 377 584 - -
Apr6g1122 673 MobiDBLite consensus disorder prediction 631 653 - -
Apr6g1122 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Apr6g1122 673 Gene3D Phosphorylase Kinase; domain 1 281 376 - -
Apr6g1122 673 SUPERFAMILY Protein kinase-like (PK-like) 277 574 IPR011009 -
Apr6g1122 673 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Apr6g1122 673 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 39 657 - -
Apr6g1122 673 MobiDBLite consensus disorder prediction 1 146 - -
Apr6g1122 673 SMART serkin_6 301 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1122 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 39 657 - -
Apr6g1122 673 Pfam Protein tyrosine and serine/threonine kinase 306 573 IPR001245 GO:0004672|GO:0006468
Apr6g1122 673 MobiDBLite consensus disorder prediction 11 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1122 Apr-Chr6 15896407 15901022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1122 111 656 Trihelix Transcription Factor Family AT1G70460 48.909 5.78e-172 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Apr6g1122 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1122 - - gmx:100781944 855.129