LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr6g1115	ATGGAGCTTTATCACAGCAGCAATCAGAACAACAACAACAACAACGTTGTTATTGCTCCGTTTGTTATAAAAACTTACCACATGGTTAACGATCCCACTACCGATAAACTCATCACGTGGGGCCCAGCCAACAACAGCTTCATCGTCCTCGACCCTCTCGATTTCTCTCACTCTCTTCTCCCTGCGTTTTTCAAGCACAACAATTTCTCAAGCTTCGTTCGCCAACTCAACACTTATGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTTCTCCGAGGGCAGAAGCAGTTGTTGAAGAACATCGTGAGGAGGAAGCACGGTGGAGGGAGGAGTGGGTCGCAGAAGGTGGAGGAGTTGGATGAAGAAACCATGGTTATGGAGATATCGAGGTTGAAGGAGGAGCAAAAAGCGTTGGAGGAAGAGCTTCGAGGGATGAATAAGAGGTTAGAGACAACAGAGAAACGACCACAACAAATGATGGCTTTTCTTTGCAAAGTAGTGGAAGATCCTAACGTTCTCTCTCGGATTCTCAAAGAGAGAGAAAGGAAGCATCTCGGTGAGAAAAAGCGCCGCCTCATAACGTCGGCGACGTCCTCCTCCTCTTCCTCCGACATGGCGGGGACAAACTCAGTCAAGACGGAGTTTGAGGAAGAGGAATTAACCGTAGGGAATAATATAATATCGTCCCCGGAAACGGGATTTGAAATTGATAATTTTTGTTCGCCGTCACCGCCGCAGGAGGCGCCGGCGGGATATTGGGGTCAAGTGCACGGGGGTGTGATGGATAGGGCTCGGATTGGGCAACAGAGGTTTGGGTATGATTGTGCCGCCGTGCCGACGCCGTTGACGGCGGTGTCTCCGGCGGCGACTGTAATGGGTGGAAGCTATTTGGGGTGTGAGAATAGTAAGGGGCGTGGGAGCATTTTTAGTGAAATGGCGGCGGAGAGTAGTTCGTTGCCGCCTTATCCGTTTTCGTTGTTGGAAGGTGGGTTTTAG	1014	0.503	MELYHSSNQNNNNNNVVIAPFVIKTYHMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKHGGGRSGSQKVEELDEETMVMEISRLKEEQKALEEELRGMNKRLETTEKRPQQMMAFLCKVVEDPNVLSRILKERERKHLGEKKRRLITSATSSSSSSDMAGTNSVKTEFEEEELTVGNNIISSPETGFEIDNFCSPSPPQEAPAGYWGQVHGGVMDRARIGQQRFGYDCAAVPTPLTAVSPAATVMGGSYLGCENSKGRGSIFSEMAAESSSLPPYPFSLLEGGF*	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr6g1115	337	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	19	330	IPR027725	-
	Apr6g1115	337	MobiDBLite	consensus disorder prediction	198	216	-	-
	Apr6g1115	337	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr6g1115	337	MobiDBLite	consensus disorder prediction	193	216	-	-
	Apr6g1115	337	SUPERFAMILY	"Winged helix" DNA-binding domain	18	110	IPR036390	-
	Apr6g1115	337	Coils	Coil	127	161	-	-
	Apr6g1115	337	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr6g1115	337	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr6g1115	337	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr6g1115	337	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR C-1	19	330	-	-
	Apr6g1115	337	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr6g1115	337	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Apr6g1115	337	Gene3D	-	13	111	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr6g1115	Apr-Chr6	15806425	15807924	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr6g1115	17	206	HSF	AT3G24520	65.979	9.29e-89	268

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Apr6g1115		HSF_DNA-bind	3.8e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr6g1115	K09419		-	gmx:100794896	424.476