Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1105 ATGCCGACCCGATCAACGGGAGTGATAACCCAAGACTGGGAGCCCGTGGTGCTGCACAAGTCCAGGCCCAAGGCCCACGACCTGCGAAACCCGAAGGCCGTCAACCAGGCCCTACGCTCCGGAACGGAGGTTCTAACGGTGAAGAAGTTCGACGGCGGTTCCAACAGAAAGCCCGGTCCAGCTCTGAACACGAGGAAGCTTGACGAGGGGACGGAACCTGCGACTCTGGAGCGCGTGGCGGGGGAGGTGCGGCACGCGATACAGAAGGCGCGTTTGGAGAAGAAGATGAGTCAGGCTGAGCTGGCGAAGCAGATTAACGAGAGGACGCAGGTTGTGCAGGAATACGAGAATGGCAAGGCTTTGCCTAACCAGGCCGTGCTTGCTAAGATGGAGAGAGTCCTCGGTGTCAAGCTCAGGGGCAAAATCGCTAAGTGA 435 0.5931 MPTRSTGVITQDWEPVVLHKSRPKAHDLRNPKAVNQALRSGTEVLTVKKFDGGSNRKPGPALNTRKLDEGTEPATLERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKALPNQAVLAKMERVLGVKLRGKIAK* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1105 144 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Apr6g1105 144 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 143 - -
Apr6g1105 144 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
Apr6g1105 144 Pfam Helix-turn-helix 87 138 IPR001387 -
Apr6g1105 144 SMART mbf_short4 86 141 IPR001387 -
Apr6g1105 144 SUPERFAMILY lambda repressor-like DNA-binding domains 84 138 IPR010982 GO:0003677
Apr6g1105 144 Gene3D - 70 144 IPR010982 GO:0003677
Apr6g1105 144 CDD HTH_XRE 86 138 IPR001387 -
Apr6g1105 144 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 143 - -
Apr6g1105 144 Coils Coil 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1105 Apr-Chr6 15731663 15732147 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Apr6g1105 MBF1 1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1105 K03627 - zju:107431864 227.639