Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1102 ATGGACGACATGGAAGACGATGCAAGGTACCCTCCCAAGTCCTTCTCTTTGAGCCGTCAAAACCCTTCCCACCGCCAAAAACACCCAATTCGAGCCCCCCCATATCACCGACCAGTCCCTACGCGCTACGAGGAAGTTGAAGACGACGACGAAGATGAAGAACCGGACGAATTCGACGACGAAAACGACGACGACGAGGCCCAAAACGGCTACGACGACGACGAAGACGATGGGTATTCGAGAAACCCCAAAAAGAGAAAGGTGCCATCTTCCAACTACGAGTTCGCGCCACGTGTCAAATTCTCATACGGTAACCGTAGTTCTGTTGAGGAATGGACGGAACATGAAACGTTCGTGCTTTTGGAAGTGTGGGGTGACAAGTTTCTTCAACTTGGGAGGAACAGTTTAAGGTCTGAGGAATGGCATGATGTGGCAGAGAAGGTTTCTGAGGAGTTGAAGGTGGAGAGAACAGTGGCACAGTGTAGGAGCATGTTGGATAAGCTTAAGAGAAGGTATAAGAAGGAGAAGAGTAGAATGGATGAGATTGGTGTGGGTTCTTGTAAATGGCCTTTCTTTAAGAAGATGGATATGTTGATGGCTTCATCTGCAAGGCAAGAGTATGGTCTTGCTTGTGGGGTTGATTCTGGTGAATATGTGTTCATGAATACAAGGGTGTATTTGAATAGGTCTAATGGTTTTGATGAGATGAGGGATAGTCCTGGGGAGTCTGAGAGTTCGGAGGAGGAGGAGGAGGATTCCGACGGGGCTGCCGTGCCGAGGAGGTTTCGCGGCGGTGTTGGTGGTGAGGAGGAGGTGGATGAGGAGGAGGATGAGGCTTCATTTCGGGTGTTGGCAGATTCGATTCAGAAGTTCGGGAAGATATATGAGAAGATTGAGAATAGCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGTTGGATTTTAATAGGGAGTTGGAGCTGCAGAAGAAGCAGATTTTGGAAAGGGCTCAGGCAGAGATTGCCAAAATACAGGAAGGGGATGATGACGAAACTGACACTTCTGCTGAGAATCTCAGTGAATAA 1068 0.486 MDDMEDDARYPPKSFSLSRQNPSHRQKHPIRAPPYHRPVPTRYEEVEDDDEDEEPDEFDDENDDDEAQNGYDDDEDDGYSRNPKKRKVPSSNYEFAPRVKFSYGNRSSVEEWTEHETFVLLEVWGDKFLQLGRNSLRSEEWHDVAEKVSEELKVERTVAQCRSMLDKLKRRYKKEKSRMDEIGVGSCKWPFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESSEEEEEDSDGAAVPRRFRGGVGGEEEVDEEEDEASFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQEGDDDETDTSAENLSE* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1102 355 MobiDBLite consensus disorder prediction 231 279 - -
Apr6g1102 355 MobiDBLite consensus disorder prediction 336 355 - -
Apr6g1102 355 Coils Coil 158 178 - -
Apr6g1102 355 Gene3D - 112 174 - -
Apr6g1102 355 MobiDBLite consensus disorder prediction 1 90 - -
Apr6g1102 355 MobiDBLite consensus disorder prediction 254 268 - -
Apr6g1102 355 Coils Coil 295 337 - -
Apr6g1102 355 Pfam Myb/SANT-like DNA-binding domain 111 197 IPR044822 -
Apr6g1102 355 PANTHER ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE FAMILY PROTEIN 38 349 - -
Apr6g1102 355 MobiDBLite consensus disorder prediction 45 73 - -
Apr6g1102 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 38 349 IPR044823 -
Apr6g1102 355 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1102 Apr-Chr6 15712286 15714830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1102 112 337 Trihelix Transcription Factor Family AT1G54060 29.434 1.28e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr6g1102 Myb_DNA-bind_4 2.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1102 - - gmx:100790166 517.694