Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1097 ATGGCGAGTCGGTTGAAAGAAGATGAGAAAAACGAGCGCGTGATTCGAGGTCTTCTCAAGCTTCAACCCAATCGCAGATGCATTAACTGCAACAGTCTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGAGAATTCACACATAGAGTAAAATCAGTTTCAATGGCTAAATTTACTTCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGACGCACAACGTCATTCTGTCCCTGATGGCAGTAATGTTGACAGACTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGAGAGAAGACTTATGACAAACCACCTAGAGTCAAATCGGGTGACAAAGATGATTTCTATCAAGGAGGATCCAAAAGCCCTCCATATGAAGATGCATATGAACGTCGTTATAGTGACAGGTCTAGTCCAGGTGGGAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAGTCCTGGTCGTCCTCCAATAATTAATGATTGGCGTCGTGAAGATCGTAGAACATTGGATGGAGATTTTAAGGTGGAAAACCAATCTCCTGAGCGAGTCAAAGATATGGGTTCTTCAAGCCCACCTATGGTTCGACCTGTTAGAGAGATTTTGGGAGAAAATGTAGTACCGCTTCGGATAAGTGAACCCCCCAAACCAAACAGTGGAAGAGCTGTTGATGGCTCAGCCCTGACACAGAGAACTGCATCTTCAAGTAGCATGGCATCCAACAATGAAAACCCAGTAGAAGTTAAACTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAGCTTCCAGTTGCTCCATCAATTCCGCAAGCCCAACAACAAACAACCGTGCCTCAACCTGCTGTGCAACCAGCAAATACCAGTGATCACAATTGGGCTTCTTTTGATGTTGCTCCTGATGCAAAAGCAACTCCTAGCGCCTCAAATCTAAATCCACTTGAATCAGTGCTGTCGCAGTTGTCTGTGCCAGCATCTTTACCTACTCATGTTTCTGGAGTCCAAGGATCTATTCCAGCTTCATCTCTTACTTCTACTCCTGGAGCCACAAGTGTTAGCGGTTTCTCAGCTTTCCCACCCAATGCTGCTTCAGTACCATCACCTGGACTGACATCAGTATTACGTCCCAATAATGCAGGACAGTGGGCCAGTTTGCAGCATCAGCAACCACTGTTCCCTGCTGCTGTTAACCAGTCTACTACACAACAATTTACACCACCAGTAGTTGGTACTGCGAATAATCAGCCATGGAATGTACCTCCTGTGCCTGCAGTGCAAGGGCATCCAAGCACACCAATGCCCCCTACATACCATCATGCCTCAAAGCCTGCCAATGAGGCTATATCTACTGTTGTTTCACAACCGTCTGTGGAAGTAAAAGCAAGTGGAAGAAAAGAACTTCCCGAGGATCTGTTCACTGTGAAATATTCTTCCTTCCCTGCTCCAGTTCCAGGTTGGCTAATGGGTGTTCCCCATGGCATGGGTATCTCACTGCAATACAATAATATGGTGCCTGTACCAAGTTTTCCACAGCCATCAAAGTCAATGAATCCATTTGATGTCGGCAGTGAACCAACCCCAGATCAAGCCCCAACTTTTCCTTCCATGTCATCCTTGCATGGTGCCCTGCCTAGTGTACCACCTTCAGGTGCAATGCACCCTGCAAACCTGGGTTATCCTTCACATGCCTGGACTGCCCCCCCATCATCATTTCCATCAGTTCTACCTGTGCAAGCACAAACTCATCCATTTACATTGGGACCAAGGGCTTATATGGGGCAACAAATGCAATCTAACATGCCAATGCCAAGGCAAGAAGTTGGGAATTTTGGTACCCAGGGAGCAGTTTTCGGCTTGTCAAATCCAGATCAGCAACTGACTGGTAGATTATCATCTACTCCCACCTCTAACCCCTTCCCTCCACAGGGGAACCCATTCGGATAA 2052 0.4557 MASRLKEDEKNERVIRGLLKLQPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNQRAKEIYFKEWDAQRHSVPDGSNVDRLRDFIKHVYVDRRFTGEKTYDKPPRVKSGDKDDFYQGGSKSPPYEDAYERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPIINDWRREDRRTLDGDFKVENQSPERVKDMGSSSPPMVRPVREILGENVVPLRISEPPKPNSGRAVDGSALTQRTASSSSMASNNENPVEVKLETTKSLIDFDADPELPVAPSIPQAQQQTTVPQPAVQPANTSDHNWASFDVAPDAKATPSASNLNPLESVLSQLSVPASLPTHVSGVQGSIPASSLTSTPGATSVSGFSAFPPNAASVPSPGLTSVLRPNNAGQWASLQHQQPLFPAAVNQSTTQQFTPPVVGTANNQPWNVPPVPAVQGHPSTPMPPTYHHASKPANEAISTVVSQPSVEVKASGRKELPEDLFTVKYSSFPAPVPGWLMGVPHGMGISLQYNNMVPVPSFPQPSKSMNPFDVGSEPTPDQAPTFPSMSSLHGALPSVPPSGAMHPANLGYPSHAWTAPPSSFPSVLPVQAQTHPFTLGPRAYMGQQMQSNMPMPRQEVGNFGTQGAVFGLSNPDQQLTGRLSSTPTSNPFPPQGNPFG* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1097 683 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Apr6g1097 683 MobiDBLite consensus disorder prediction 650 673 - -
Apr6g1097 683 CDD ArfGap_AGFG 12 122 - -
Apr6g1097 683 MobiDBLite consensus disorder prediction 550 580 - -
Apr6g1097 683 MobiDBLite consensus disorder prediction 550 575 - -
Apr6g1097 683 MobiDBLite consensus disorder prediction 257 280 - -
Apr6g1097 683 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Apr6g1097 683 MobiDBLite consensus disorder prediction 242 280 - -
Apr6g1097 683 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Apr6g1097 683 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Apr6g1097 683 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Apr6g1097 683 MobiDBLite consensus disorder prediction 645 683 - -
Apr6g1097 683 MobiDBLite consensus disorder prediction 296 330 - -
Apr6g1097 683 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Apr6g1097 683 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Apr6g1097 683 MobiDBLite consensus disorder prediction 126 142 - -
Apr6g1097 683 PANTHER ARFGAP/RECO-RELATED 1 683 IPR044820 GO:0005096
Apr6g1097 683 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Apr6g1097 683 MobiDBLite consensus disorder prediction 304 330 - -
Apr6g1097 683 MobiDBLite consensus disorder prediction 126 229 - -
Apr6g1097 683 PANTHER ARF GTPASE ACTIVATOR 1 683 - -
Apr6g1097 683 MobiDBLite consensus disorder prediction 191 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1097 Apr-Chr6 15646357 15653804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1097 12 122 C2H2 Transcription Factor Family AT4G21160 32.759 3.98e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1097 - - gmx:102669541 1121.3