Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1094 ATGGATTTGGAAGAGAAGTTCCCTGCTAAAGCTTCTGGTATTCAAAGCCTTTCATCGAGTGTGCAAAGTACTCCAGAAAAAAATAGCCATTCAGATGATGCTTCAAGGAGTTCTGAACTCCTTCAGGAGTTCCTAAAATCTGGTCCAAAAAAGGAGCTTCTACGAATGTGCTTTGATAAGGACAAAAAGAACGTTTCTTCGAAAGGCAGGATGACTGAGACTAAGTCAACTGGTAAAATTGTCAAGAAACAGGACTCAAAAAAGGTTTCTGGTCTCAGCAATCAGCCTTCTAGGAAGCAACAACGCAAAGGCGAAAACCCTGTGCGGTTTGTACCAGCTCCAGATCCACCTATTGAGTTTGGACATTCAAACTCCTGGATCTGTAAAAATTCTGCATGCAGAGCAGTTCTATCTAAAGATGACACATTTTGTAAAAGGTGCTCTTGCTGTATTTGCCACCATTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGCGGGTTGTCTTGCCATATCGAGTGTGCCCTTCAACATGAAAAAGTAGGAGTTGTTGATCATGGACAACTTATGCAACTCGATGGTGGTTATTGTTGTGCATCTTGCGGCAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAACTAAATATAGCAAAAGATGCTCGGCGTGTAGATGTACTGTGCTACAGGATATATTTGAGCTACAGGCTTCTGGATGGGACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAGGCAAAGGCTAAACTGGAAAAGGAAGTTGGTCCCGTTAATGGGGTTTCTGCCAAGATGGCACGGGGCATTGTCAGCAGACTCCCCATTGCCAGTGATGTACAGAAACTCTGCTCTCTTGCTATTGAGAATGCTAATAAGTGGTTGGCCACTGTTCCTGATGTAAATCCAGAATCCAGAGAGGGTTCCCTTCCCGCTGCCTGCAAGTTTGTTTTTGAAGAGATAACGGCTTCCTCAGTCAAAATCATTTTAATTGAAATGTCAAATGCATCTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGAGTAGGGAGGAATCACACACAAAAGAACCTGTTTGTGTGTTTCCCAAATCTCAGAGGAGGATTTTTATCTCCAATCTCCAGCCTTGCACAGAATATACTTTTCGGATTGTATCTTTTGCAGATATGGGTGACCTGGGTCATTCTGAGGCCAAGTGTTTCACCAAAAGTGTTGAGATATTGGAGAAAAATTCGTCTACATCAGTTGCCATGAATCATAAAAAGGAGAATCTTCAAAATGGAGGCAGCTCTTCTGACTCAAAAATGGAGCCCAATCCCTCAATGGCAGACTCTGGATTTAAGGTTCGAGACCTTGGAAAAATTTTGCATCTTACATGGGCTCAAGAACAAGGTTGCTTGGAGGGGTTCTGCTGTGCTGATATGAGAAATTGCTGTGGGCAAAGTGAAATGATCAAGCCCAGCAATCCACAGGAGCAGCTGCCTTCAGTTTCACGGGGCCTTGATCTAAATGTTGTTTCAGTGCCTGATTTAAATGAAGAACTTACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATTTAGCAAGACCACATGGTAGCGGTGATTCCCAAACTTGGAACCATGGGCCAACTGGAGAAGTGCCAGCTGTTGACTCTCGTGTAGATGCTGGTAGGAAAAGGATAACAAGCACAAATGAAGAGACCCATGATTGTGACAGTACTTTGATAAATGAATCTCCTATACACGCATCTGAAGGTTCGTTCTCCTTAGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGCCAGGGTCATATCAAACAGGAGTTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGATCAACAGAGCAAGAACGTAGGGTGGTTAATACTTTCATTCAAACCCTGATTGATGATCCAAGTAGTTTGGCAGGGCAACTAGTTGATTCCTTTTCTGATATTATATCCAACAAGAGGCGAAGAAATGGATTCTGCAATAAGGCTGTTGCATCAAGTTAA 2160 0.4236 MDLEEKFPAKASGIQSLSSSVQSTPEKNSHSDDASRSSELLQEFLKSGPKKELLRMCFDKDKKNVSSKGRMTETKSTGKIVKKQDSKKVSGLSNQPSRKQQRKGENPVRFVPAPDPPIEFGHSNSWICKNSACRAVLSKDDTFCKRCSCCICHHFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHEMVKEAKAKLEKEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIENANKWLATVPDVNPESREGSLPAACKFVFEEITASSVKIILIEMSNASSEDIKGYKLWYYKSREESHTKEPVCVFPKSQRRIFISNLQPCTEYTFRIVSFADMGDLGHSEAKCFTKSVEILEKNSSTSVAMNHKKENLQNGGSSSDSKMEPNPSMADSGFKVRDLGKILHLTWAQEQGCLEGFCCADMRNCCGQSEMIKPSNPQEQLPSVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARPHGSGDSQTWNHGPTGEVPAVDSRVDAGRKRITSTNEETHDCDSTLINESPIHASEGSFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRRRNGFCNKAVASS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1094 719 MobiDBLite consensus disorder prediction 568 597 - -
Apr6g1094 719 MobiDBLite consensus disorder prediction 12 28 - -
Apr6g1094 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 715 IPR044514 GO:0010048|GO:0040029
Apr6g1094 719 MobiDBLite consensus disorder prediction 64 111 - -
Apr6g1094 719 MobiDBLite consensus disorder prediction 1 41 - -
Apr6g1094 719 MobiDBLite consensus disorder prediction 435 458 - -
Apr6g1094 719 CDD FN3 332 411 IPR003961 GO:0005515
Apr6g1094 719 Gene3D Immunoglobulins 314 425 IPR013783 -
Apr6g1094 719 PANTHER VIN3-LIKE PROTEIN 1 55 715 - -
Apr6g1094 719 MobiDBLite consensus disorder prediction 87 101 - -
Apr6g1094 719 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Apr6g1094 719 MobiDBLite consensus disorder prediction 64 86 - -
Apr6g1094 719 MobiDBLite consensus disorder prediction 435 463 - -
Apr6g1094 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Apr6g1094 719 SUPERFAMILY Fibronectin type III 334 415 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1094 Apr-Chr6 15619270 15627519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1094 124 710 PHD Gene Family AT3G24440 49.750 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1094 - - gmx:100780157 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1435 2 20404474 20412827 Apr6g1094 6 15619270 15627519 PCT