Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1072 ATGTCATCCCTGACTGCCTTATTTGCTTTTCTTGCTTGTGGAGCTCCAAAGCTGTCTGGTTTACTTCTGTCTCATTCTCTGTGCTGTGCTTCCTCACATGCACTTTGTCCCTTCTTGAGCCTTTGCATGCAACTCAGATCACTTGATCAGAGACACAAATGGTTGACCCAGCTCAAAATTTTGAAGCAAAAAATGAATAGTAAGAGAGGAAAAGAGAGTGTTTCAACCAAAGAAGCAAACTTGAACACTAGGAGGAAAATTAGAGTTGTATACACTGACCCAGATGCAACTGATTATTCAAGTGAAGAAAATGATGAGTTTTTGAGTAATGGGTATCAATTAAATGGTGGTTCCAAGAGGATTGTCAAGGAATTTTTGGTTCCATACATGCCAAACAAAGCAGAGAAATCTTCACAAGAAGATGTCAATAGTGAAAAGTTCAAAGCAAATCCAGGCCTTTTTGCAAGGAGGAGGAACAGAAGATCATCAAGCATCTACAGAGGTGTTCAAAGAAGGAAATGGGGAAAATATGTTGCAGAAATTCGAGACCCTTTTCAAGGGGTCAGAATGTGGCTTGGTACTTTTGATACTGAAGAAGAAGCTGCCATGGCTTATGAGAAAAAGAAGAATGAGTTTGAATTGGCTTTGAGGGAAAGGGATGCATTGGCTTCTGAGAATGCCAAAGAAGTGTTGTTTCACCCATCCCCATCATCAGTGCTCGATGTCAGCACTACAAAAGGTCCACTAGATATTAATGACACTAGTGGTTTAGTCAGAGAAAAGGTCAAGGTGGAAACTAATTGTGAAGGAGGAGGCAATGATGTGGTACCAGTTTATAGTGAAGATCATTCAATTCAATATTTGCTAGAGGAGCCAGTTATGCCATCATTGACTAGCTTGGATTTCTATTCGGATGTAGAGAAAGGAGCAGTGCTGCCTGGTAGTGACTTCTATAATTTCTTGGACAATGACATTAAAGGTGGTTCTATTTGGAATGTGGAACATGGGGAAGGGATCATTCCCCCCCCTGTTGAAAGTTCCGTTGATGAGTTAGCATGGATTGATGAAACTCTAAATTGGGAATGCCCCTAA 1092 0.4075 MSSLTALFAFLACGAPKLSGLLLSHSLCCASSHALCPFLSLCMQLRSLDQRHKWLTQLKILKQKMNSKRGKESVSTKEANLNTRRKIRVVYTDPDATDYSSEENDEFLSNGYQLNGGSKRIVKEFLVPYMPNKAEKSSQEDVNSEKFKANPGLFARRRNRRSSSIYRGVQRRKWGKYVAEIRDPFQGVRMWLGTFDTEEEAAMAYEKKKNEFELALRERDALASENAKEVLFHPSPSSVLDVSTTKGPLDINDTSGLVREKVKVETNCEGGGNDVVPVYSEDHSIQYLLEEPVMPSLTSLDFYSDVEKGAVLPGSDFYNFLDNDIKGGSIWNVEHGEGIIPPPVESSVDELAWIDETLNWECP* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1072 363 CDD AP2 165 221 IPR001471 GO:0003700|GO:0006355
Apr6g1072 363 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Apr6g1072 363 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Apr6g1072 363 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 62 362 - -
Apr6g1072 363 Gene3D AP2/ERF domain 165 219 IPR036955 GO:0003700|GO:0006355
Apr6g1072 363 Coils Coil 205 225 - -
Apr6g1072 363 SUPERFAMILY DNA-binding domain 164 209 IPR016177 GO:0003677
Apr6g1072 363 PANTHER - 62 362 - -
Apr6g1072 363 ProSiteProfiles AP2/ERF domain profile. 165 225 IPR001471 GO:0003700|GO:0006355
Apr6g1072 363 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Apr6g1072 363 Pfam AP2 domain 165 209 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1072 Apr-Chr6 15388617 15390159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1072 85 228 AP2-EREBP Transcription Factor Family AT1G68550 38.411 1.44e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr6g1072 AP2 5.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1072 - - aprc:113866790 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1072 6 15388617 15390159 Apr6g1072 6 15388617 15390159 ECH