Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1070 ATGAAAGAAGCAAGTGCATTAGGAGCAAGGACAGCACGAGCATGTGATAGCTGCCTTAAAGTAAGAGCAAGGTGGTATTGTGCTGCTGATGATGCTTTCCTTTGCCATGGTTGTGATAACATGGTTCATTCAGCAAACCAATTAGCATGCAGGCATGAAAGGGTTAGGCTTCAAACTGTATCCTCTAAGGTCAACTACTCATTGACCCCTCATCATAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCATAACAGCAAGCATTTATGGGTGCAACAACAACAACAACAACCACCATTACATGAAAAAGAAGTGCTTTTCAGTAACACCATTACCCTTCCCCTTGTGCCAGATCTTGGAAGTGAAGAACCCCTGCTTAATGATGAGACTGAGGAGCAAATGCTTTGTCGTGTGCCCGTGTTTGATGTTGAGCTATACAATGAAGTGAAGGGTGAGAGATTGAATTTGGACACCACCATGAACAATGATGCTGTGGATGGTGAAGAAGCCTTTGATTTGGACAACTTTTCTTCTGAGTTTCTCCCATCAGATATGGATCTTGCTGAGTTTGCTGTTGATGTGGAAAGTTTACTTGAAAACGGGGTTGATGATGATTCATCTGGGCACGTGAAAGGATCATCAGAACTTGATTGCAAAGAAGAAGATGAGATAGATGCATATGTTAATAGACTTGGAGCCAAAGGTACAATGGTAAAGGTTAAAAATGAAGAAGAATTTGATGCTGAAACATCTTGTCATTTGGATTCAATTCTTAACATGAACAGTGAATCCTTTGATTGGAATATTATTGATTCATCAGAATCACCTCAACACGAAAAGGAGGAAAAGGTGGTGAGTGAAGTGGGAAAAAGGAAGGAGATGTTTTTGAGGCTAAACTATGAAGAGGTTATCACTGCTTGGGACAGTCAAGGTTCAGCATGGACAACAGGAACCCCTCCTAAGTTCGACACTCATGATTGCTGGCCAGATTTCTTGGGTTCGAGTGGTGCAGATGTTCAATGGTGTTACGGGGAAGTAAGAGGATTAAGGGGGCATGCGGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCTAAAAAGATAAGGTATGAAGTGAGGAAGTTGAACGCAGAGAAAAGACCAAGAATGAAAGGTCGATTTGTGAAGAGGACATCATTTGTTGGAGCCACTGCTTAA 1239 0.4253 MKEASALGARTARACDSCLKVRARWYCAADDAFLCHGCDNMVHSANQLACRHERVRLQTVSSKVNYSLTPHHKVAWHSGFTRKARTPRHNSKHLWVQQQQQQPPLHEKEVLFSNTITLPLVPDLGSEEPLLNDETEEQMLCRVPVFDVELYNEVKGERLNLDTTMNNDAVDGEEAFDLDNFSSEFLPSDMDLAEFAVDVESLLENGVDDDSSGHVKGSSELDCKEEDEIDAYVNRLGAKGTMVKVKNEEEFDAETSCHLDSILNMNSESFDWNIIDSSESPQHEKEEKVVSEVGKRKEMFLRLNYEEVITAWDSQGSAWTTGTPPKFDTHDCWPDFLGSSGADVQWCYGEVRGLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGATA* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1070 412 CDD Bbox1_BBX-like 14 57 - -
Apr6g1070 412 ProSiteProfiles CCT domain profile. 362 404 IPR010402 GO:0005515
Apr6g1070 412 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Apr6g1070 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 409 - -
Apr6g1070 412 SMART bboxneu5 10 57 IPR000315 GO:0008270
Apr6g1070 412 Pfam CCT motif 362 404 IPR010402 GO:0005515
Apr6g1070 412 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1070 Apr-Chr6 15376352 15378719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1070 4 404 C2C2-CO-like Transcription Factor Family AT1G25440 44.496 2.60e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr6g1070 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1070 - - gmx:100802113 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1449 2 20564801 20566688 Apr6g1070 6 15376352 15378719 PCT