Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1064 ATGGAGGAAAATCTACCTCCTGGATTCAGGTTTCATCCTACAGATGAAGAGCTCATCACATGCTATCTTACAAGAAAAGTGTCTGATTCTACCTTCACATCAAAAGCTATAGCCGTTGTTGATCTCAATAAGTCTGAACCTTGGGACCTCCCAGGTAAAGCTTTCATGGGGGAGAAAGAATGGTATTTCTTTAGCTTAAGAGACCGAAAGTATCCAACAGGACTTCGAACAAACCGAGCCACTGAATCAGGCTACTGGAAAACCACAGGGAAAGACAAGGAAATTTTTGGTGCTGGGGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTTTATAGGGGTAGAGCTCCAAGGGGCGAGAAAAGCAATTGGGTCATGCACGAATATAGACTAGAAAACAAGCATCACTTTCGACCTTCAAAGGACGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAGCTTGGCAGCAAAAAAGCCACAACAAACATCTTCCTCCCAACCAGAGTCTCCTTGTGACACAGCATCAATGGTGAATGAATTTGGTGATGTTGACATTCCCAATCTAAACAACATTGCAAATTCATCAACTGTACTCCCTAACATTTCAGGACAAACTTTCAACACTAACCTCAATAACAATATTAATCATAATGTTAACACAAATATGAACTTGACCATGAATTGGCCATGTTCAAGTGAGGTTCCCTCTCTTCCATCTCTCCCATGGCCTTCTGAGTTGCTAAATCCAAATAATATTTCTGTAAATTCTTTGCTTCTCAAAGCATTACAACTTAGGAGTTATCAACAAAGAGAAGCAGCAGCAGCAGCAGTCACTGATCATTTTGCATCATATATGCCTCATGGAGTTTCCCATGTTGGAAATGACTTAAGTTCAAATCTCACTGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAACACCAACACCAACACCAACACCAACACCAGCAGCAACAGCAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 1011 0.4115 MEENLPPGFRFHPTDEELITCYLTRKVSDSTFTSKAIAVVDLNKSEPWDLPGKAFMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFGAGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHFRPSKDEWVVCRVFQKSLAAKKPQQTSSSQPESPCDTASMVNEFGDVDIPNLNNIANSSTVLPNISGQTFNTNLNNNINHNVNTNMNLTMNWPCSSEVPSLPSLPWPSELLNPNNISVNSLLLKALQLRSYQQREAAAAAVTDHFASYMPHGVSHVGNDLSSNLTASSSKVLECMPQHQHQHQHQHQQQQQEQPFNLDSIW* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1064 336 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Apr6g1064 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 265 - -
Apr6g1064 336 MobiDBLite consensus disorder prediction 310 336 - -
Apr6g1064 336 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Apr6g1064 336 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Apr6g1064 336 PANTHER BNACNNG63190D PROTEIN 2 265 - -
Apr6g1064 336 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1064 Apr-Chr6 15325491 15329054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1064 1 336 NAC Transcription Factor Family AT3G18400 55.780 9.97e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr6g1064 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1064 - - gmx:100787111 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1064 6 15325491 15329054 Apr6g1064 6 15325491 15329054 ECH
Apr2g1453 2 20597496 20601097 Apr6g1064 6 15325491 15329054 PCT